CORG structural RNAs

Info

This page shows the results of a scan for structural RNAs in the CORG 2 database. All conserved non-coding blocks (CNBs) longer than 50 where scanned using RNAz. CNBs longer than 300 where scanned in overlapping windows of length 300 and step-size 50. Both forward and reverse strand were considered.

The table shows the CNBs predicted to contain a functional RNA (RNAz probability >0.5). Overlapping CNBs have been grouped into clusters. The clusters are ordered by relevance.

Individual CNBs are denoted with der CORG ID. If longer than 300 and thus scanned in windows, the number of the window (_0,_1,...,_n) is appended. "-rev" indicates that it is the reverse complement of the original CNB.

The genomic context of the CNBs can be browsed using the UCSC genome browser. All CORG CNBs have been mapped to the genomes of human (Hs), mouse (Mm) and rat (Rn) using BLAT.

Results

Hit	CNB	N	Identity	Length	z	SCI	P	Browse	Comment
#1	373196-rev	4	66.04	135	-2.59	0.56	0.999461	Hs \| Mm \| Rn	Not annotated. Predicted as a coding exon of a gene of unknown function. Signal is in the reverse strand compared to the putative mRNA.
#2	194777	4	77.95	85	-5.13	0.94	0.998802	Hs \| Mm \| Rn	microRNA: hsa-mir-196b
	194820	4	77.39	82	-4.6	0.94	0.999566	Hs \| Mm \| Rn
	194839	4	77.98	82	-4.55	0.95	0.999513	Hs \| Mm \| Rn
	194941	4	77.98	82	-4.55	0.95	0.999513	Hs \| Mm \| Rn
#3	393756	5	80.12	66	-3.07	0.93	0.998167	Hs \| Mm \| Rn	Iron Response Element (IRE) according to UTRdb. In the 5'-UTR of "Solute carrier family 40 (iron-regulated transporter)".
	393756-rev	5	80.12	66	-3.39	0.94	0.998829	Hs \| Mm \| Rn
	393758	4	78.72	65	-3.24	0.92	0.999608	Hs \| Mm \| Rn
	393758-rev	4	78.72	65	-3.84	0.98	0.999612	Hs \| Mm \| Rn
	393786	5	79.79	67	-3.27	0.93	0.998586	Hs \| Mm \| Rn
	393786-rev	5	79.79	67	-3.99	0.98	0.998693	Hs \| Mm \| Rn
	393794	4	75.23	75	-2.44	0.9	0.999124	Hs \| Mm \| Rn
	393794-rev	4	75.23	75	-2.42	0.93	0.999174	Hs \| Mm \| Rn
#4	405712	4	83.46	160	-2.97	0.85	0.996903	Hs \| Mm \| Rn	In the 5'-UTR of "nuclear factor of activated T-cells 5, tonicity-responsive (NFAT5)". This gene is the only known transcription factor which regulates genes in response to osmotic stress. Splice variants of the 5'-UTR exist and this hit corresponds to one UTR-exon. It is a well conserved and stable hairpin. This element is not mentioned in literature and not annotated in the UTRdb, although the UTR of NFAT5 is in the UTRdb. It might be a new element important for osmotic-regulation.
#5	159914	4	88.18	86	-3.91	0.91	0.998171	Hs \| Mm \| Rn	microRNA: hsa-mir-138-2
	159914-rev	4	88.18	86	-2.46	0.85	0.977148	Hs \| Mm \| Rn
	159932	4	87.91	87	-3.77	0.93	0.998679	Hs \| Mm \| Rn
	159932-rev	4	87.91	87	-2.28	0.86	0.967049	Hs \| Mm \| Rn
	159939	4	86.67	95	-4.7	0.92	0.996954	Hs \| Mm \| Rn
	159939-rev	4	86.67	95	-3.17	0.85	0.995615	Hs \| Mm \| Rn
#6	119596	4	70.5	76	-4.86	0.95	0.999188	Hs \| Mm \| Rn	microRNA: hsa-mir-34b
	119596-rev	4	70.5	76	-6.36	0.89	0.987742	Hs \| Mm \| Rn
	119607	4	85.34	73	-3.67	0.74	0.993647	Hs \| Mm \| Rn
	119607-rev	4	85.34	73	-4.83	0.76	0.992155	Hs \| Mm \| Rn
	119658	4	84.21	74	-4.95	0.82	0.996679	Hs \| Mm \| Rn
	119658-rev	4	84.21	74	-6.49	0.76	0.948821	Hs \| Mm \| Rn
#7	453969	4	75.34	208	-2.48	0.55	0.981465	Hs \| Mm \| Rn	A coding exon of "retinoic acid induced 17". Possibly a structured mRNA.
	453969-rev	4	75.34	208	-2.75	0.62	0.999016	Hs \| Mm \| Rn
	453971	4	75.61	207	-2.57	0.52	0.969446	Hs \| Mm \| Rn
	453971-rev	4	75.61	207	-2.79	0.61	0.998926	Hs \| Mm \| Rn
	453983	4	75.61	207	-2.57	0.51	0.967628	Hs \| Mm \| Rn
	453983-rev	4	75.61	207	-2.79	0.6	0.998525	Hs \| Mm \| Rn
#8	260572-rev	4	62.35	71	-1.75	0.57	0.984341	Hs \| Mm \| Rn	Immediately upstream of a hypothetical protein. According to EST data it is not part of the UTR. A short, but stable and conserved element.
#9	226470	5	84.63	100	-4.77	0.95	0.999744	Hs \| Mm \| Rn	microRNA: hsa-mir-10a
	226470-rev	5	84.63	100	-3.17	0.82	0.998369	Hs \| Mm \| Rn
	226514	4	81.6	100	-4.85	0.94	0.998649	Hs \| Mm \| Rn
	226514-rev	4	81.6	100	-2.83	0.81	0.996733	Hs \| Mm \| Rn
	226555	4	81.8	100	-4.84	0.94	0.998613	Hs \| Mm \| Rn
	226555-rev	4	81.8	100	-2.84	0.81	0.996574	Hs \| Mm \| Rn
	226677	4	48.23	82	-2.11	0.3	0.858439	Hs \| Mm \| Rn
#10	57633	4	77.9	92	-2.25	0.66	0.975925	Hs \| Mm \| Rn	In the 5'-UTR of a hypothetical protein. Overlaps with an IRES element annotation in UTRdb.
#10	57635	4	77.45	92	-2.27	0.66	0.979565	Hs \| Mm \| Rn
#11	238772-rev	4	76.96	75	-2.11	0.73	0.979763	Hs \| Mm \| Rn	In the 5'-UTR of a hypothetical protein. Overlaps with an IRES element annotation in UTRdb.
	238775-rev	4	76.84	75	-2.09	0.73	0.978546	Hs \| Mm \| Rn
	238777-rev	4	77.11	75	-2.07	0.73	0.973854	Hs \| Mm \| Rn
#12	110345	4	95.4	87	-4.49	0.99	0.98467	Hs \| Mm \| Rn	5'-UTR of "DiGeorge syndrome critical region gene 8". The CNB is immediately upstream of an annotated IRES pattern according to UTRdb.
	110345-rev	4	95.4	87	-3.39	0.91	0.982021	Hs \| Mm \| Rn
	110355	5	92.18	92	-4.62	0.95	0.999974	Hs \| Mm \| Rn
	110355-rev	5	92.18	92	-3.34	0.86	0.99982	Hs \| Mm \| Rn
	110374	5	93.23	89	-4.67	0.95	0.999965	Hs \| Mm \| Rn
	110374-rev	5	93.23	89	-3.68	0.86	0.999842	Hs \| Mm \| Rn
	110388	5	86.36	109	-2.92	0.91	0.99956	Hs \| Mm \| Rn
	110388-rev	5	86.36	109	-1.89	0.82	0.890824	Hs \| Mm \| Rn
	110423	5	86.36	109	-2.92	0.91	0.99956	Hs \| Mm \| Rn
	110423-rev	5	86.36	109	-1.89	0.82	0.890824	Hs \| Mm \| Rn
#13	430423-rev	4	80.79	194	-2.01	0.69	0.880959	Hs \| Mm \| Rn	Immediately upstream of "hairy and enhancer of split 1". In the RefSeq mRNA this hit is not in the UTR of the mRNA. However, in other mRNAs from GenBank it is. In rat the sequence can be found two times in the upstream region of this gene. The second hit corresponds to the shorter CNB 430443. This hit has only one short stem, which is also part of the other CNBs 430423 and 430453 in the RNAalifold prediction. This hit can only be found in the reverse strand compared to the mRNA.
	430443-rev	5	48.39	68	-0.85	0.42	0.982874	Hs \| Mm \| Rn
	430453-rev	5	82.38	197	-2.41	0.73	0.965022	Hs \| Mm \| Rn
#14	391314	4	51.37	105	-2.34	0.38	0.969223	Hs \| Mm \| Rn	microRNA: hsa-mir-196a-2
	391315	4	82.79	107	-5.16	0.99	0.996294	Hs \| Mm \| Rn
	391318	4	58.2	96	-1.91	0.42	0.820585	Hs \| Mm \| Rn
#15	154806-rev	4	75.5	84	-1.96	0.63	0.91974	Hs \| Mm \| Rn	Upstream of "Basic helix-loop-helix domain containing, class B 5, (BHLHB5)". In human the CNB is in the 5'-UTR of the RefSeq mRNA, in mouse only part of it is in the UTR, the rest extends into the untranscribed upstream region. So the hit it is most likely no regulatory motif of the mRNA. There are many ESTs in mouse and human indicating antisense transcription. The CNB lies in an intron of the antisense transcript and only in the antisense strand this hit can be found.
#15	154812-rev	4	76	84	-1.98	0.63	0.917999	Hs \| Mm \| Rn
#16	456150-rev	5	83.39	64	-2.24	0.72	0.915486	Hs \| Mm \| Rn	In an intron of the spliced 5'-UTR of "Checkpoint suppressor 1".
#16	456164-rev	5	83.52	64	-2.27	0.72	0.9211	Hs \| Mm \| Rn
#17	481656_0	4	79.27	300	-2.82	0.84	0.998706	Hs \| Mm \| Rn	Artifactual hit because of many Ns in the alignment!
	481656_0-rev	4	79.27	300	-2.14	0.81	0.974945	Hs \| Mm \| Rn
	481656_1	4	79.12	300	-2.86	0.86	0.998954	Hs \| Mm \| Rn
	481656_2	4	81.21	300	-1.71	0.93	0.93228	Hs \| Mm \| Rn
	481656_2-rev	4	81.21	300	-1.82	0.86	0.897705	Hs \| Mm \| Rn
	481656_3-rev	4	81.92	300	-1.28	0.88	0.528877	Hs \| Mm \| Rn
	481656_4	4	78.07	254	-1.12	0.95	0.905807	Hs \| Mm \| Rn
	481656_4-rev	4	78.07	254	-2.41	0.83	0.995865	Hs \| Mm \| Rn
#18	238158	4	83.5	85	-1.81	0.65	0.654797	Hs \| Mm \| Rn	microRNA: hsa-mir-10b
	238163	5	88.23	103	-5.49	0.96	0.999685	Hs \| Mm \| Rn
	238163-rev	5	88.23	103	-2.83	0.9	0.999628	Hs \| Mm \| Rn
	238188	5	89.93	98	-5.78	0.97	0.999503	Hs \| Mm \| Rn
	238188-rev	5	89.93	98	-2.83	0.92	0.999907	Hs \| Mm \| Rn
	238231	4	84.71	83	-1.67	0.67	0.599283	Hs \| Mm \| Rn
	238265	4	91.41	99	-5.66	0.96	0.966927	Hs \| Mm \| Rn
	238265-rev	4	91.41	99	-2.74	0.97	0.997531	Hs \| Mm \| Rn
#19	406119	5	71.92	209	-1.69	0.63	0.902041	Hs \| Mm \| Rn	Immediately upstream of "Zinc finger protein of the cerebellum 3". Not in the UTR of the RefSeq mRNA.
#20	461722-rev	4	76.89	86	-2.03	0.55	0.710848	Hs \| Mm \| Rn	This cluster consists of two independently detected secondary structures (CNBs 461739/461749 with P>0.9 and CNBs 461722/461745 with P around 0.7). Both hits can be found in two adjacent coding exons of the following RefSeq gene in rat: "CIN85-associated multi-domain containing RhoGAP". The antisense strand of the mRNA seems to be the relevant strand for these motifs.
	461739	4	65.37	112	-2.29	0.46	0.966849	Hs \| Mm \| Rn
	461739-rev	4	65.37	112	-2.78	0.47	0.996817	Hs \| Mm \| Rn
	461745-rev	4	77.15	86	-2.06	0.55	0.730303	Hs \| Mm \| Rn
	461749	4	65.01	115	-2.61	0.44	0.983664	Hs \| Mm \| Rn
	461749-rev	4	65.01	115	-3.15	0.48	0.999247	Hs \| Mm \| Rn
#21	204490_3	4	78.35	300	-2.38	0.62	0.97107	Hs \| Mm \| Rn	Artifact of the N-rich insertion in the alignment.
#21	204490_3-rev	4	78.35	300	-1.74	0.74	0.82139	Hs \| Mm \| Rn	Artifact of the N-rich insertion in the alignment.
#22	153187	4	76.43	50	-1.19	0.91	0.89309	Hs \| Mm \| Rn	In the 5'-UTR of "Distal-less homeo box 1". This UTR is contained in the UTRdb but no known element is annotated.
#23	264053	4	72.63	109	-2.36	0.61	0.996975	Hs \| Mm \| Rn	In the 5'-UTR of "Brain chitinase like protein 2". Upstream of an IRES pattern annotation from UTRdb.
	264064	5	68.22	95	-1.85	0.35	0.690229	Hs \| Mm \| Rn
	264095	4	68.91	104	-2.19	0.54	0.989914	Hs \| Mm \| Rn
#24	211555	5	66.81	72	-2.25	0.29	0.889915	Hs \| Mm \| Rn
#25	391446-rev	4	73.43	70	-1.62	0.71	0.8881	Hs \| Mm \| Rn
#26	291556-rev	4	79.35	218	-2.11	0.63	0.886496	Hs \| Mm \| Rn
#26	291558-rev	4	79.32	218	-2.11	0.63	0.887716	Hs \| Mm \| Rn
#27	376858_6-rev	4	64.92	300	-1.78	0.46	0.77625	Hs \| Mm \| Rn	Not annotated. Predicted as coding region by various programs and supported by ESTs.
#27	376858_9-rev	4	74.51	300	-2.53	0.6	0.996946	Hs \| Mm \| Rn
#28	284325	4	65.04	109	-2.23	0.4	0.782945	Hs \| Mm \| Rn	Intron of the mouse gene "Skeletal muscle LIM-protein 2".
#28	284325-rev	4	65.04	109	-2.18	0.47	0.96441	Hs \| Mm \| Rn	Intron of the mouse gene "Skeletal muscle LIM-protein 2".
#29	146100	4	81.65	93	-2	0.72	0.887403	Hs \| Mm \| Rn
	149120-rev	4	81.31	203	-2.3	0.59	0.854045	Hs \| Mm \| Rn
	149142-rev	4	81.31	203	-2.29	0.59	0.853798	Hs \| Mm \| Rn
#30	363120	4	75.78	114	-2.48	0.49	0.912551	Hs \| Mm \| Rn	Upstream of "Eyes absent 1". Four isoforms are known including splice variants where the 5'-UTR is involved. This CNB is spliced out for the known isoforms. Possibly another isoform exists including this region.
	363120-rev	4	75.78	114	-2.2	0.49	0.711207	Hs \| Mm \| Rn
	363126	4	74.24	119	-2.5	0.48	0.94721	Hs \| Mm \| Rn
	363128	4	74.24	119	-2.5	0.48	0.94721	Hs \| Mm \| Rn
	363129	4	73.5	119	-2.58	0.41	0.783159	Hs \| Mm \| Rn
	363129-rev	4	73.5	119	-2.67	0.43	0.908895	Hs \| Mm \| Rn
	363131	4	73.03	126	-2.22	0.52	0.949851	Hs \| Mm \| Rn
	363131-rev	4	73.03	126	-2.16	0.5	0.857069	Hs \| Mm \| Rn
	363138	4	75.78	114	-2.48	0.49	0.912551	Hs \| Mm \| Rn
	363138-rev	4	75.78	114	-2.2	0.49	0.711207	Hs \| Mm \| Rn
#31	363361-rev	4	82.79	158	-2.04	0.69	0.858061	Hs \| Mm \| Rn
#32	357813	4	73.49	80	-1.84	0.59	0.84892	Hs \| Mm \| Rn
#33	357706	5	75.52	78	-1.98	0.48	0.845641	Hs \| Mm \| Rn
#34	386451	4	65.24	71	-1.86	0.44	0.68617	Hs \| Mm \| Rn	In an exon of the 5'-UTR of "Hypothetical protein FLJ10404". Included in the UTRdb, but no known sequence motif annotated.
#34	386451-rev	4	65.24	71	-1.96	0.54	0.985241	Hs \| Mm \| Rn
#35	54448-rev	4	75.39	272	-1.94	0.58	0.830181	Hs \| Mm \| Rn
#36	143688-rev	5	88.94	116	-1.83	0.85	0.937683	Hs \| Mm \| Rn	Upstream of "Zinc finger protein 503". In human not part of the UTR but a cDNA is known in this region which is transcribed from the other strand and lacks an obvious open reading frame. This transcript might be a ncRNA.
	143704-rev	4	91.2	116	-1.53	0.86	0.689753	Hs \| Mm \| Rn
	143739-rev	4	88.63	115	-1.73	0.86	0.829174	Hs \| Mm \| Rn
#37	90322_0-rev	4	76.72	300	-2.03	0.57	0.808937	Hs \| Mm \| Rn
#38	81335	4	89.82	100	-1.88	0.79	0.807337	Hs \| Mm \| Rn
#39	294591	5	46.28	84	-0.62	0.28	0.78028	Hs \| Mm \| Rn
#40	406996_3	5	72.33	300	-1.86	0.27	0.825636	Hs \| Mm \| Rn
	406996_4	5	77.02	255	-2	0.29	0.811535	Hs \| Mm \| Rn
	406997_1	5	74.22	300	-1.74	0.31	0.63138	Hs \| Mm \| Rn
	406997_2	5	72.8	253	-1.75	0.32	0.652482	Hs \| Mm \| Rn
	407017_3	5	72.33	300	-1.86	0.27	0.825636	Hs \| Mm \| Rn
	407017_4	5	77.02	255	-2	0.29	0.811535	Hs \| Mm \| Rn
#41	388305-rev	4	66.37	228	-1.81	0.46	0.750737	Hs \| Mm \| Rn
#42	234029_27-rev	4	66.95	300	-1.55	0.53	0.750696	Hs \| Mm \| Rn
#43	501415_5-rev	5	62.65	300	-2.12	0.33	0.586649	Hs \| Mm \| Rn	Coding region of a hypothetical protein (not part of this special cDNA but ESTs show that longer mRNAs including this region exist).
	501415_6-rev	5	63.22	300	-2.42	0.35	0.923727	Hs \| Mm \| Rn
	501416_6-rev	5	62.99	300	-2.42	0.39	0.960532	Hs \| Mm \| Rn
	501416_8-rev	5	62.78	280	-1.78	0.39	0.542661	Hs \| Mm \| Rn
	501424_6-rev	5	63.14	300	-2.35	0.37	0.922539	Hs \| Mm \| Rn
	501427_11-rev	5	64.83	264	-1.82	0.39	0.595675	Hs \| Mm \| Rn
	501427_9-rev	5	61.53	300	-1.95	0.37	0.652539	Hs \| Mm \| Rn
	501429_6-rev	5	62.99	300	-2.42	0.39	0.960532	Hs \| Mm \| Rn
	501429_8-rev	5	62.86	282	-1.81	0.39	0.586558	Hs \| Mm \| Rn
#44	167677	4	79.26	199	-1.73	0.63	0.594393	Hs \| Mm \| Rn
#44	167677-rev	4	79.26	199	-1.99	0.68	0.895479	Hs \| Mm \| Rn
#45	134270_18-rev	5	80.55	300	-2.14	0.54	0.771469	Hs \| Mm \| Rn	Not annotated. A large region conserved in all species. Several independent slices have been predicted by RNAz. Possibly a ncRNA. Browse human region of this CNB
	134270_19-rev	5	79.74	300	-1.94	0.48	0.532311	Hs \| Mm \| Rn
	134270_20-rev	5	73.45	300	-1.96	0.38	0.870174	Hs \| Mm \| Rn
	134270_43-rev	5	35.02	300	-0.66	0.1	0.561898	Hs \| Mm \| Rn
	134297_11-rev	5	73.18	300	-1.89	0.41	0.807401	Hs \| Mm \| Rn
	134297_12-rev	5	73.22	300	-2.16	0.39	0.963496	Hs \| Mm \| Rn
	134297_9	5	73.6	300	-1.91	0.37	0.822028	Hs \| Mm \| Rn
	134297_9-rev	5	73.6	300	-1.76	0.37	0.605648	Hs \| Mm \| Rn
#46	118425-rev	5	79.75	57	-1.89	0.59	0.708401	Hs \| Mm \| Rn
	118430-rev	5	78.91	57	-1.92	0.57	0.726953	Hs \| Mm \| Rn
	118442-rev	5	79.09	57	-2.03	0.57	0.815804	Hs \| Mm \| Rn
	118451-rev	4	77.42	57	-1.57	0.74	0.707521	Hs \| Mm \| Rn
#47	300319_1-rev	4	79.29	300	-2.28	0.53	0.738632	Hs \| Mm \| Rn
#48	251196	4	92.62	104	-1.9	0.8	0.729549	Hs \| Mm \| Rn
#48	251196-rev	4	92.62	104	-1.71	0.84	0.724313	Hs \| Mm \| Rn
#49	502451	4	82.76	58	-2.31	0.57	0.710592	Hs \| Mm \| Rn
#49	502451-rev	4	82.76	58	-1.81	0.69	0.739415	Hs \| Mm \| Rn
#50	470004-rev	4	71.81	243	-1.56	0.61	0.717927	Hs \| Mm \| Rn	U93 snoRNA
#51	231552-rev	5	49.43	133	-1.15	0.28	0.696569	Hs \| Mm \| Rn
#51	231571	4	52.13	109	-1.26	0.42	0.73738	Hs \| Mm \| Rn
#52	473673	4	69.2	245	-2.02	0.45	0.726603	Hs \| Mm \| Rn
#52	473677	4	69.2	245	-1.98	0.45	0.684389	Hs \| Mm \| Rn
#53	136553	4	75.43	97	-1.6	0.67	0.704306	Hs \| Mm \| Rn
#54	145953	5	70.81	125	-1.95	0.39	0.881375	Hs \| Mm \| Rn
#54	145953-rev	5	70.81	125	-1.68	0.42	0.514276	Hs \| Mm \| Rn
#55	386626	5	87.45	54	-1.33	0.89	0.523598	Hs \| Mm \| Rn	Short but structurally well conserved element. Can be found in the 5'-UTR of "Ribosomal protein L12".
	386638	5	87.55	54	-1.49	0.89	0.744332	Hs \| Mm \| Rn
	386639	4	87.58	50	-1.68	1	0.949649	Hs \| Mm \| Rn
	386639-rev	4	87.58	50	-1.17	1	0.676188	Hs \| Mm \| Rn
	386640	4	87.27	54	-1.35	0.91	0.588393	Hs \| Mm \| Rn
#56	359973-rev	4	84.21	164	-1.97	0.63	0.694057	Hs \| Mm \| Rn
#57	489516	4	86.5	156	-1.41	0.75	0.527445	Hs \| Mm \| Rn
	489516-rev	4	86.5	156	-1.94	0.77	0.838764	Hs \| Mm \| Rn
	489523	4	86.5	156	-1.41	0.75	0.527445	Hs \| Mm \| Rn
	489523-rev	4	86.5	156	-1.94	0.77	0.838764	Hs \| Mm \| Rn
#58	223876_5	4	92.41	271	-1.88	0.82	0.783487	Hs \| Mm \| Rn
#58	223876_5-rev	4	92.41	271	-1.69	0.79	0.579588	Hs \| Mm \| Rn
#59	110574-rev	4	82.74	99	-1.67	0.73	0.677336	Hs \| Mm \| Rn
#60	466447	4	76.37	81	-1.76	0.61	0.668074	Hs \| Mm \| Rn
#61	79519-rev	5	86.61	105	-1.96	0.72	0.740989	Hs \| Mm \| Rn
#61	79524-rev	5	86.46	105	-1.63	0.73	0.564338	Hs \| Mm \| Rn
#62	233460-rev	5	63.72	86	-1.36	0.57	0.650398	Hs \| Mm \| Rn
	233531-rev	4	76.03	89	-1.54	0.7	0.64747	Hs \| Mm \| Rn
	233687-rev	5	63.95	86	-1.41	0.59	0.72879	Hs \| Mm \| Rn
	233826-rev	5	65.7	86	-1.27	0.6	0.571552	Hs \| Mm \| Rn
#63	124950	4	83.43	120	-1.7	0.68	0.646642	Hs \| Mm \| Rn
#64	268475-rev	5	82.21	108	-1.64	0.71	0.602184	Hs \| Mm \| Rn
	268477-rev	5	79.11	124	-1.9	0.58	0.729641	Hs \| Mm \| Rn
	268486-rev	5	82.21	108	-1.64	0.71	0.602184	Hs \| Mm \| Rn
#65	500548	4	88.37	96	-1.43	0.89	0.635059	Hs \| Mm \| Rn
#66	280356_4-rev	5	38.14	300	-2.67	0.07	0.66413	Hs \| Mm \| Rn
	280356_5-rev	5	37.28	300	-1.91	0.08	0.619546	Hs \| Mm \| Rn
	280356_6-rev	5	37.4	300	-1.87	0.08	0.616746	Hs \| Mm \| Rn
#67	300313	5	88.49	93	-1.47	0.82	0.628126	Hs \| Mm \| Rn
#68	265692_0	4	84.76	300	-1.67	0.66	0.596321	Hs \| Mm \| Rn
	265692_1	4	85.62	300	-1.88	0.71	0.768555	Hs \| Mm \| Rn
	265692_2	4	87.57	300	-1.42	0.71	0.50829	Hs \| Mm \| Rn
#69	501830	4	79.35	67	-1.49	0.76	0.5688	Hs \| Mm \| Rn
#69	501835	4	79.2	67	-1.58	0.75	0.674071	Hs \| Mm \| Rn
#70	478948-rev	4	70.83	97	-1.33	0.65	0.618566	Hs \| Mm \| Rn
#71	116399-rev	4	78.72	107	-1.58	0.71	0.613252	Hs \| Mm \| Rn
#72	414286-rev	4	87.29	137	-1.46	0.69	0.509414	Hs \| Mm \| Rn
	414303	4	84.19	143	-1.66	0.69	0.63854	Hs \| Mm \| Rn
	414341-rev	4	83.79	73	-2.21	0.57	0.596319	Hs \| Mm \| Rn
	414348-rev	4	83.79	73	-2.21	0.57	0.596319	Hs \| Mm \| Rn
	414393-rev	4	83.5	85	-1.93	0.62	0.658446	Hs \| Mm \| Rn
#73	70688_0	5	84.5	300	-1.6	0.71	0.534951	Hs \| Mm \| Rn	Coding region of histone proteins. The complete reverse strand of the histone genes seems to form a structured RNA.
	70719_0	5	87.12	300	-1.48	0.79	0.539112	Hs \| Mm \| Rn
	70780_0	5	86.13	300	-1.58	0.76	0.578986	Hs \| Mm \| Rn
	70818_0	5	86.25	300	-1.63	0.78	0.645302	Hs \| Mm \| Rn
	70839_0	5	87.44	300	-1.53	0.79	0.604918	Hs \| Mm \| Rn
	70843_0	5	86.02	300	-1.61	0.75	0.596432	Hs \| Mm \| Rn
	70846_0	5	86.2	300	-1.6	0.75	0.588682	Hs \| Mm \| Rn
	70916_0	5	87.01	300	-1.63	0.76	0.631521	Hs \| Mm \| Rn
	71034_0	5	86.23	300	-1.58	0.76	0.57672	Hs \| Mm \| Rn
	71050_0	5	86.24	300	-1.54	0.77	0.555562	Hs \| Mm \| Rn
	71089_0	5	85.42	300	-1.51	0.74	0.5	Hs \| Mm \| Rn
	71124_0	4	89.65	300	-1.58	0.82	0.678612	Hs \| Mm \| Rn
	71129_0	5	86.23	300	-1.54	0.75	0.531462	Hs \| Mm \| Rn
	71132_0	4	88.55	300	-1.42	0.83	0.571072	Hs \| Mm \| Rn
	71177_0	5	87.05	300	-1.45	0.79	0.517242	Hs \| Mm \| Rn
	71218_0	5	85.34	300	-1.56	0.74	0.527208	Hs \| Mm \| Rn
	71269_0	4	81.33	300	-1.52	0.71	0.531186	Hs \| Mm \| Rn
	71399_0	4	88.15	300	-1.74	0.81	0.783614	Hs \| Mm \| Rn
	71443_0	4	88.49	300	-1.46	0.85	0.617267	Hs \| Mm \| Rn
	71507_0	4	88.38	300	-1.44	0.83	0.584404	Hs \| Mm \| Rn
	71520_0	4	89.87	300	-1.56	0.84	0.685229	Hs \| Mm \| Rn
	71528_0	4	88.67	300	-1.55	0.82	0.667722	Hs \| Mm \| Rn
	71530_0	5	86.97	300	-1.52	0.77	0.562423	Hs \| Mm \| Rn
	71547_0	4	87.22	300	-1.43	0.78	0.552108	Hs \| Mm \| Rn
	71567_0	5	86.44	300	-1.56	0.78	0.591168	Hs \| Mm \| Rn
	71594_0	5	86.54	300	-1.59	0.77	0.608821	Hs \| Mm \| Rn
	71615_0	4	89.71	300	-1.54	0.83	0.666598	Hs \| Mm \| Rn
	71646_0	5	86.16	300	-1.49	0.76	0.5	Hs \| Mm \| Rn
	71689_0	5	86.13	300	-1.51	0.74	0.50227	Hs \| Mm \| Rn
	71700_0	4	87.57	300	-1.68	0.79	0.725704	Hs \| Mm \| Rn
	71711_0	5	87.31	300	-1.53	0.78	0.585254	Hs \| Mm \| Rn
	71775_0	4	81.33	300	-1.51	0.71	0.509731	Hs \| Mm \| Rn
	71915_0	5	86.44	300	-1.5	0.76	0.512643	Hs \| Mm \| Rn
	71921_0	5	85.77	300	-1.58	0.75	0.560909	Hs \| Mm \| Rn
	72025_0	5	85.78	300	-1.66	0.75	0.623932	Hs \| Mm \| Rn
	72039_0	4	85.48	300	-1.7	0.82	0.75434	Hs \| Mm \| Rn
	72084_0	5	86.15	300	-1.7	0.76	0.683588	Hs \| Mm \| Rn
	72087_0	5	86.51	300	-1.53	0.78	0.570153	Hs \| Mm \| Rn
	72106_0	4	85.42	300	-1.73	0.81	0.76808	Hs \| Mm \| Rn
	72126_0	5	87.02	300	-1.61	0.8	0.678783	Hs \| Mm \| Rn
	72128_0	5	85.61	300	-1.58	0.74	0.543488	Hs \| Mm \| Rn
	72156_0	5	86.92	300	-1.51	0.79	0.570311	Hs \| Mm \| Rn
	72202_0	5	87.01	300	-1.63	0.76	0.631521	Hs \| Mm \| Rn
	72240_0	4	86.42	300	-1.6	0.77	0.661527	Hs \| Mm \| Rn
	72277_0	5	87.14	300	-1.55	0.78	0.600879	Hs \| Mm \| Rn
	72280_0	5	85.32	300	-1.56	0.75	0.539707	Hs \| Mm \| Rn
	72301_0	5	86.15	300	-1.68	0.78	0.684662	Hs \| Mm \| Rn
	72326_0	5	84.4	300	-1.57	0.71	0.517748	Hs \| Mm \| Rn
	72358_0	4	87.22	300	-1.42	0.79	0.543848	Hs \| Mm \| Rn
	72373_0	4	89.49	300	-1.69	0.84	0.774627	Hs \| Mm \| Rn
	72395_0	4	88.67	300	-1.5	0.82	0.63175	Hs \| Mm \| Rn
	72399_0	5	86.52	300	-1.6	0.77	0.621079	Hs \| Mm \| Rn
	72438_0	5	87.04	300	-1.46	0.78	0.504256	Hs \| Mm \| Rn
	72439_0	5	87.01	300	-1.63	0.76	0.631521	Hs \| Mm \| Rn
	72518_0	4	89.39	300	-1.64	0.82	0.732327	Hs \| Mm \| Rn
	72538_0	5	86.51	300	-1.56	0.78	0.590023	Hs \| Mm \| Rn
	72599_0	5	86.51	300	-1.56	0.78	0.590023	Hs \| Mm \| Rn
	72700_0	5	86.76	300	-1.57	0.79	0.630234	Hs \| Mm \| Rn
	72798_0	5	87.13	300	-1.6	0.81	0.694471	Hs \| Mm \| Rn
	72841_0	5	86.11	300	-1.49	0.76	0.5	Hs \| Mm \| Rn
	72858_0	4	87.22	300	-1.42	0.79	0.543848	Hs \| Mm \| Rn
	72936_0	5	87.44	300	-1.53	0.79	0.604918	Hs \| Mm \| Rn
	72961_0	5	85.6	300	-1.57	0.74	0.547665	Hs \| Mm \| Rn
	72990_0	5	86.77	300	-1.48	0.76	0.504246	Hs \| Mm \| Rn
73025_0	4	88.81	300	-1.6	0.81	0.68262	Hs \| Mm \| Rn
73058_0	5	86.51	300	-1.56	0.78	0.590023	Hs \| Mm \| Rn
73068_0	4	89.44	300	-1.36	0.82	0.510012	Hs \| Mm \| Rn
#74	502368-rev	4	86.32	59	-1.49	0.78	0.590887	Hs \| Mm \| Rn
#75	160930	4	67.3	109	-1.26	0.58	0.587229	Hs \| Mm \| Rn
#76	83240-rev	4	82.3	155	-1.67	0.66	0.582765	Hs \| Mm \| Rn
#77	467045_3-rev	5	81.85	299	-2.01	0.54	0.569489	Hs \| Mm \| Rn
#77	467058_3-rev	5	81.82	300	-2.06	0.53	0.570399	Hs \| Mm \| Rn
#78	292681	4	71.75	129	-1.48	0.6	0.564901	Hs \| Mm \| Rn
#79	244427_1-rev	4	85.77	300	-1.38	0.76	0.505275	Hs \| Mm \| Rn
	244427_2	4	84.16	300	-1.57	0.74	0.609967	Hs \| Mm \| Rn
	244427_4	4	87.58	300	-1.44	0.73	0.534426	Hs \| Mm \| Rn
	244427_5	4	89.21	260	-1.75	0.7	0.587784	Hs \| Mm \| Rn
#80	469885	4	86.41	175	-1.55	0.66	0.506078	Hs \| Mm \| Rn
#80	469885-rev	4	86.41	175	-1.56	0.72	0.602686	Hs \| Mm \| Rn
#81	200349	4	83.97	238	-1.54	0.68	0.540494	Hs \| Mm \| Rn
#82	23410	5	38.93	55	-0.33	0.13	0.533916	Hs \| Mm \| Rn
#83	300387	5	77.52	236	-1.84	0.46	0.528351	Hs \| Mm \| Rn
#84	458276-rev	5	92.16	102	-1.33	0.81	0.523322	Hs \| Mm \| Rn
#85	388273	4	87.33	183	-1.41	0.72	0.515239	Hs \| Mm \| Rn
#86	481033	4	35.79	94	-0.52	0.18	0.51268	Hs \| Mm \| Rn
#87	233356	5	35.75	72	-0.4	0.09	0.512137	Hs \| Mm \| Rn
#88	489526-rev	4	41.39	224	-1.22	0.18	0.510424	Hs \| Mm \| Rn
#89	410996-rev	4	84.16	86	-1.54	0.66	0.5025	Hs \| Mm \| Rn

Stefan Washietl

Last modified: Tue Sep 21 18:10:26 CEST 2004