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Results for CNB 386626

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

386626_ENSG00000158066_HUMAN_936_989/1-54        AGGCCAAGGTGCAACTTCCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCA
386626_ENSMUSG00000038900_MOUSE_936_989/1-54     AGGCAACGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCA
386626_ENSDARG00000006691_ZEBRAFISH_905_956/1-54 -GGTGAAGGTGCAACAGTTTTCGGTCGTCCCGAATCCGGGTTCATCCGACACC-
386626_SINFRUG00000134705_FUGU_6362_6413/1-54    -GGTGAAGGTGCAACAGTAATCGGTCGTCCCGACTGCGGGTTCATCCGACACC-
386626_ENSRNOG00000016220_RAT_9891_9942/1-54     -GGCAACGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACC-
                                                  **  * ********     ************* * ***************** 


//

386626.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 54
 Mean pairwise identity:  87.45
 Mean single sequence MFE: -16.88
 Consensus MFE: -14.98
 Energy contribution: -14.98
 Covariance contribution:   0.00
 Mean z-score:  -1.33
 Structure conservation index:   0.89
 SVM decision value:  -0.02
 SVM RNA-class probability: 0.523598
 Prediction: RNA

######################################################################

>386626_ENSG00000158066_HUMAN_936_989/1-54
AGGCCAAGGUGCAACUUCCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACCA
.......((((.........((((..(.((((....))))..)..)))))))). ( -16.00)
>386626_ENSMUSG00000038900_MOUSE_936_989/1-54
AGGCAACGGUGCAACUUUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACCA
.(....)((((.........((((..(.((((....))))..)..)))))))). ( -17.30)
>386626_ENSDARG00000006691_ZEBRAFISH_905_956/1-54
GGUGAAGGUGCAACAGUUUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACC
((((..((((.(((.(..(((((.....)))))..)..))))).))..)))) ( -17.50)
>386626_SINFRUG00000134705_FUGU_6362_6413/1-54
GGUGAAGGUGCAACAGUAAUCGGUCGUCCCGACUGCGGGUUCAUCCGACACC
((((..((((.(((.(((.((((.....)))).)))..))))).))..)))) ( -18.20)
>386626_ENSRNOG00000016220_RAT_9891_9942/1-54
GGCAACGGUGCAACUUUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACC
(....)((((.........((((..(.((((....))))..)..)))))))) ( -15.40)
>consensus
_GGCAAAGGUGCAACUUUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACC_
.......((((.........((((..(.((((....))))..)..)))))))). (-14.98 = -14.98 +   0.00) 

386626.rnaz

RNAalifold consensus structure

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