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Results for CNB 393758

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

393758_ENSMUSG00000025993_MOUSE_9754_9818/1-65     TAAGGCTTTGGCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAAAGAAGACAAAA
393758_SINFRUG00000122977_FUGU_3358_3422/1-65      TAAAAGCATTTCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAGGGGAGGAAAAC
393758_ENSRNOG00000003872_RAT_9703_9767/1-65       TAAGGCTTTAGCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAAAGAAGACATAA
393758_ENSDARG00000000241_ZEBRAFISH_9812_9874/1-65 -AAGGTTATTTCTCTCCGACTTCAGCTACAGTGATAGCTAAGTTTGGAGAGGAGAGAAGG
                                                    **     *  ** *** *************** **************  * **  *   


393758_ENSMUSG00000025993_MOUSE_9754_9818/1-65     AGAAG
393758_SINFRUG00000122977_FUGU_3358_3422/1-65      GGGAG
393758_ENSRNOG00000003872_RAT_9703_9767/1-65       AGAAG
393758_ENSDARG00000000241_ZEBRAFISH_9812_9874/1-65 GAGA-
                                                      * 


//

393758.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 65
 Mean pairwise identity:  78.72
 Mean single sequence MFE: -19.22
 Consensus MFE: -17.76
 Energy contribution: -16.95
 Covariance contribution:  -0.81
 Mean z-score:  -3.24
 Structure conservation index:   0.92
 SVM decision value:   3.78
 SVM RNA-class probability: 0.999608
 Prediction: RNA

######################################################################

>393758_ENSMUSG00000025993_MOUSE_9754_9818/1-65
UAAGGCUUUGGCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGACAAAAAGAAG
......((((.(((((((((((.(((((......)))))))).))))))))....))))...... ( -18.40)
>393758_SINFRUG00000122977_FUGU_3358_3422/1-65
UAAAAGCAUUUCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAGGGGAGGAAAACGGGAG
........((((((((((((((.(((((......)))))))).)))))))))))........... ( -18.50)
>393758_ENSRNOG00000003872_RAT_9703_9767/1-65
UAAGGCUUUAGCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGACAUAAAGAAG
.....(((((.(((((((((((.(((((......)))))))).))))))))......)))))... ( -18.50)
>393758_ENSDARG00000000241_ZEBRAFISH_9812_9874/1-65
AAGGUUAUUUCUCUCCGACUUCAGCUACAGUGAUAGCUAAGUUUGGAGAGGAGAGAAGGGAGA
.......((((((((((((((.(((((......)))))))).))))))))))).......... ( -21.50)
>consensus
UAAGGCUAUUGCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGACAAAAAGAAG
...........(((((((((((.(((((......)))))))).)))))))).............. (-17.76 = -16.95 +  -0.81) 

393758.rnaz

RNAalifold consensus structure

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