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Results for CNB 405712

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

405712_ENSG00000102908_HUMAN_9381_9537/1-160      TTTATTTCTCATTTTATAATTGATATCTGGAATAATCAGCAGCTCTTTTCTCATTTATTT
405712_ENSRNOG00000011879_RAT_9411_9567/1-160     TCTATTTTTCATTTTATAATTGGTATCTGGAATAATCAGCAGCTCTTTTCTCATTTATTT
405712_ENSDARG00000020872_ZEBRAFISH_188_345/1-160 -TTATTCTTTTTTTGCTGATGTCTACATGGGATGACCAGCGCTTCTTGTTTATTGGCTGT
405712_ENSMUSG00000003847_MOUSE_9379_9533/1-160   -TTATTTTTCATTTTATAATTGGTATCTGGAATAATCAGCAGCTCTTTTCTCATTTATTT
                                                    ****  *  ***  * **   **  *** ** * ****   **** * *  *   * *


405712_ENSG00000102908_HUMAN_9381_9537/1-160      --TCTCATATTTTTATTCCAGG-ATTTGCCTCTGAAGCAGGGAGTGTCTGCATTAAAAAT
405712_ENSRNOG00000011879_RAT_9411_9567/1-160     --TCTCATATTTTTATTCCAGG-ATTTGCCTCTGAAGCAGGGAGTGTCTGCATTAAAAAT
405712_ENSDARG00000020872_ZEBRAFISH_188_345/1-160 CATTTGTGGTTTTTATTTCAGGGAGTTCCCTCTGAATCAGGGAGCGTCTGCATATAAAAT
405712_ENSMUSG00000003847_MOUSE_9379_9533/1-160   --TCTCATATTTTTATTCCAGG-ATTTGCCTCTGAAGCAGGGAGTGTCTGCATTAAAAAT
                                                    * *    ******** **** * ** ******** ******* ********  *****


405712_ENSG00000102908_HUMAN_9381_9537/1-160      GACCTGTAGTTCTCTGCTTCATAGGTTAGAAACTTATTTT
405712_ENSRNOG00000011879_RAT_9411_9567/1-160     GACCTGTAGTTCTCTGCTTCATAGGTTAGAAACTTATTTT
405712_ENSDARG00000020872_ZEBRAFISH_188_345/1-160 GGTCTGCAGTTCTCTGCTTCGTAGGTCAGAAGCTTGTTT-
405712_ENSMUSG00000003847_MOUSE_9379_9533/1-160   GACCTGTAGTTCTCTGCTTCATAGGTTAGAAACTTATTT-
                                                  *  *** ************* ***** **** *** *** 


//

405712.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 160
 Mean pairwise identity:  83.46
 Mean single sequence MFE: -38.44
 Consensus MFE: -32.74
 Energy contribution: -31.37
 Covariance contribution:  -1.38
 Mean z-score:  -2.97
 Structure conservation index:   0.85
 SVM decision value:   2.77
 SVM RNA-class probability: 0.996903
 Prediction: RNA

######################################################################

>405712_ENSG00000102908_HUMAN_9381_9537/1-160
UUUAUUUCUCAUUUUAUAAUUGAUAUCUGGAAUAAUCAGCAGCUCUUUUCUCAUUUAUUUUCUCAUAUUUUUAUUCCAGGAUUUGCCUCUGAAGCAGGGAGUGUCUGCAUUAAAAAUGACCUGUAGUUCUCUGCUUCAUAGGUUAGAAACUUAUUUU
....(((((................((((((((((...................................))))))))))....((((.((((((((((((...(((((............))))))))))))))))).)))).)))))........ ( -36.55)
>405712_ENSRNOG00000011879_RAT_9411_9567/1-160
UCUAUUUUUCAUUUUAUAAUUGGUAUCUGGAAUAAUCAGCAGCUCUUUUCUCAUUUAUUUUCUCAUAUUUUUAUUCCAGGAUUUGCCUCUGAAGCAGGGAGUGUCUGCAUUAAAAAUGACCUGUAGUUCUCUGCUUCAUAGGUUAGAAACUUAUUUU
((((.....................((((((((((...................................))))))))))....((((.((((((((((((...(((((............))))))))))))))))).)))))))).......... ( -36.55)
>405712_ENSDARG00000020872_ZEBRAFISH_188_345/1-160
UUAUUCUUUUUUUGCUGAUGUCUACAUGGGAUGACCAGCGCUUCUUGUUUAUUGGCUGUCAUUUGUGGUUUUUAUUUCAGGGAGUUCCCUCUGAAUCAGGGAGCGUCUGCAUAUAAAAUGGUCUGCAGUUCUCUGCUUCGUAGGUCAGAAGCUUGUUU
.............(((..(((((((.......(((((((((((((((..((..(((..(.....)..)))..)).(((((((......))))))).))))))))))............))))).((((....))))...))))).))..)))...... ( -44.20)
>405712_ENSMUSG00000003847_MOUSE_9379_9533/1-160
UUAUUUUUCAUUUUAUAAUUGGUAUCUGGAAUAAUCAGCAGCUCUUUUCUCAUUUAUUUUCUCAUAUUUUUAUUCCAGGAUUUGCCUCUGAAGCAGGGAGUGUCUGCAUUAAAAAUGACCUGUAGUUCUCUGCUUCAUAGGUUAGAAACUUAUUU
.....((((...............((((((((((...................................))))))))))....((((.((((((((((((...(((((............))))))))))))))))).))))..))))....... ( -36.45)
>consensus
_UUAUUUUUCAUUUUAUAAUUGGUAUCUGGAAUAAUCAGCAGCUCUUUUCUCAUUUAUUU__UCUCAUAUUUUUAUUCCAGG_AUUUGCCUCUGAAGCAGGGAGUGUCUGCAUUAAAAAUGACCUGUAGUUCUCUGCUUCAUAGGUUAGAAACUUAUUU_
..((..((((............((.((((((((((.....................................)))))))))).))..((((.((((((((((((...(((((............))))))))))))))))).))))..))))..)).... (-32.74 = -31.37 +  -1.38) 

405712.rnaz

RNAalifold consensus structure

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