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Results for CNB 466447

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

466447_ENSG00000115507_HUMAN_1790_1865/1-81        ---NNNNNNNN-NNNT-TAATCCTGGGGTTTTATGGGCTGAGCGTTAAGAAAATTCGCCT
466447_ENSMUSG00000005917_MOUSE_1696_1771/1-81     ---CTTCTTTC-TCCT-TAATCCCAAGGTTTTACAGGATGAGCATTAAGAAAATTCGCCT
466447_ENSDARG00000018318_ZEBRAFISH_2201_2278/1-81 -CTCTTCTCGCCTCCTCTAATCCCAAGATTT-ACGAGCTCAGCATTTAGAAAATTCGACT
466447_ENSRNOG00000008756_RAT_2563_2640/1-81       CCTCTTCTTTC-TCCC-TAATCCCAAGGTTTTACAGGATGAGCATTAAGGAAATTCGCCT
                                                                    ******   * *** *   * * *** ** ** ******* **


466447_ENSG00000115507_HUMAN_1790_1865/1-81        GCAATTTGGGATTAGATAAAT
466447_ENSMUSG00000005917_MOUSE_1696_1771/1-81     CCAATTTGGGATTAGATAAAT
466447_ENSDARG00000018318_ZEBRAFISH_2201_2278/1-81 GCAATTTGGGATTAGACAAA-
466447_ENSRNOG00000008756_RAT_2563_2640/1-81       CCAATTTGGGATTAGATAAA-
                                                    *************** *** 


//

466447.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 81
 Mean pairwise identity:  76.37
 Mean single sequence MFE: -16.12
 Consensus MFE:  -9.82
 Energy contribution:  -9.58
 Covariance contribution:  -0.25
 Mean z-score:  -1.76
 Structure conservation index:   0.61
 SVM decision value:   0.28
 SVM RNA-class probability: 0.668074
 Prediction: RNA

######################################################################

>466447_ENSG00000115507_HUMAN_1790_1865/1-81
NNNNNNNNNNNUUAAUCCUGGGGUUUUAUGGGCUGAGCGUUAAGAAAAUUCGCCUGCAAUUUGGGAUUAGAUAAAU
...........(((((((..((.......((((.(((...........)))))))....))..)))))))...... ( -13.40)
>466447_ENSMUSG00000005917_MOUSE_1696_1771/1-81
CUUCUUUCUCCUUAAUCCCAAGGUUUUACAGGAUGAGCAUUAAGAAAAUUCGCCUCCAAUUUGGGAUUAGAUAAAU
...........(((((((((((........((((...(.....)...))))........)))))))))))...... ( -14.69)
>466447_ENSDARG00000018318_ZEBRAFISH_2201_2278/1-81
CUCUUCUCGCCUCCUCUAAUCCCAAGAUUUACGAGCUCAGCAUUUAGAAAAUUCGACUGCAAUUUGGGAUUAGACAAA
..............((((((((((((......(....).(((....((....))...)))..)))))))))))).... ( -17.20)
>466447_ENSRNOG00000008756_RAT_2563_2640/1-81
CCUCUUCUUUCUCCCUAAUCCCAAGGUUUUACAGGAUGAGCAUUAAGGAAAUUCGCCUCCAAUUUGGGAUUAGAUAAA
..............(((((((((((((((........)))).....(((........)))..)))))))))))..... ( -19.20)
>consensus
___CUUCUUUC_UCCU_UAAUCCCAAGGUUUUACAGGAUGAGCAUUAAGAAAAUUCGCCUCCAAUUUGGGAUUAGAUAAA_
.................((((((((((((((........)))).....((....))........))))))))))....... ( -9.82 =  -9.58 +  -0.25) 

466447.rnaz

RNAalifold consensus structure

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