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Results for CNB 502451-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


502451_ENSG00000166535_HUMAN_9684_9739/1-58        -TAGATGATGGGAGCAAACAAGACCATGTTCTGCTCGCCACAGCCACTGGGCATCTG-
502451_ENSMUSG00000052587_MOUSE_1864_1921/1-58     GTAGATGTTGGGAGCAAAAAGGACCATGTTCTGCTCCCCACAGCCATAGGGCATTTGG
502451_ENSRNOG00000014814_RAT_8495_8552/1-58       ATAGATGTTTGGAGCAAAAAGGACCATGTTCTGCTCCCCACAGCCATAGGGCATTTGG
502451_ENSDARG00000008835_ZEBRAFISH_2351_2408/1-58 GTAAATATTGGGAGCGAGAATGATCATGTTCTGTTCTCCACAGCCATAAGGCATCTGT
                                                    ** **  * ***** *  * ** ********* ** *********   ***** ** 

502451-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 58
 Mean pairwise identity:  82.76
 Mean single sequence MFE: -17.50
 Consensus MFE: -12.11
 Energy contribution: -12.93
 Covariance contribution:   0.81
 Mean z-score:  -1.81
 Structure conservation index:   0.69
 SVM decision value:   0.45
 SVM RNA-class probability: 0.739415
 Prediction: RNA

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>502451_ENSG00000166535_HUMAN_9684_9739/1-58
UAGAUGAUGGGAGCAAACAAGACCAUGUUCUGCUCGCCACAGCCACUGGGCAUCUG
(((((..((((((((((((......)))).))))).)))..(((....)))))))) ( -18.80)
>502451_ENSMUSG00000052587_MOUSE_1864_1921/1-58
GUAGAUGUUGGGAGCAAAAAGGACCAUGUUCUGCUCCCCACAGCCAUAGGGCAUUUGG
.....(((.(((((((....((((...))))))))))).)))(((....)))...... ( -20.00)
>502451_ENSRNOG00000014814_RAT_8495_8552/1-58
AUAGAUGUUUGGAGCAAAAAGGACCAUGUUCUGCUCCCCACAGCCAUAGGGCAUUUGG
.....(((..((((((....((((...))))))))))..)))(((....)))...... ( -15.70)
>502451_ENSDARG00000008835_ZEBRAFISH_2351_2408/1-58
GUAAAUAUUGGGAGCGAGAAUGAUCAUGUUCUGUUCUCCACAGCCAUAAGGCAUCUGU
........(((((((.(((((......))))))))).)))..(((....)))...... ( -15.50)
>consensus
GUAGAUGUUGGGAGCAAAAAGGACCAUGUUCUGCUCCCCACAGCCAUAGGGCAUCUGG
.....(((.(((((((....((((...))))))))))).)))(((....)))...... (-12.11 = -12.93 +   0.81) 

502451-rev.rnaz

RNAalifold consensus structure

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