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Results for CNB 211555

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

211555_ENSG00000167165_HUMAN_87_157/1-72           GTGCCCATGGATGGGAGCCACTGGTTC-ACCATGAGGTCGGTGGTGGAGAAACTCATTCT
211555_ENSMUSG00000026294_MOUSE_330_401/1-72       CTCTCCATGGATAGAAGCCACACATTTTACCATGAAATCTCTTTTGGATAAACTATCCCA
211555_ENSDARG00000006220_ZEBRAFISH_5196_5265/1-72 ATGCCAGTGGATGGCAGCCATTGGTTG-AGCATGAAGATCCTGGTGGAAGAGATGTCTAG
211555_SINFRUG00000153233_FUGU_2836_2905/1-72      -TGCCTGTGGATGGAAGCCACTGGCTC-AGCATGAAGATACTGGTGAAGGAGCTGGTCCA
211555_ENSRNOG00000018740_RAT_985_1055/1-72        GTGCCTGTGGATAGGAGCCACAAGTGT-ACCATGAAATCTCTTTTGGGTAAACTGGCCCA
                                                    *  *  ***** * *****        * *****      *  **    *  *      


211555_ENSG00000167165_HUMAN_87_157/1-72           CAGGGGGCATGA
211555_ENSMUSG00000026294_MOUSE_330_401/1-72       CAGAGGCCATGA
211555_ENSDARG00000006220_ZEBRAFISH_5196_5265/1-72 TAGGGGTCATG-
211555_SINFRUG00000153233_FUGU_2836_2905/1-72      GAGGGGCCACGA
211555_ENSRNOG00000018740_RAT_985_1055/1-72        CAGAGGCCATGA
                                                    ** ** ** * 


//

211555.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 72
 Mean pairwise identity:  66.81
 Mean single sequence MFE: -22.82
 Consensus MFE:  -6.64
 Energy contribution:  -6.88
 Covariance contribution:   0.24
 Mean z-score:  -2.25
 Structure conservation index:   0.29
 SVM decision value:   0.96
 SVM RNA-class probability: 0.889915
 Prediction: RNA

######################################################################

>211555_ENSG00000167165_HUMAN_87_157/1-72
GUGCCCAUGGAUGGGAGCCACUGGUUCACCAUGAGGUCGGUGGUGGAGAAACUCAUUCUCAGGGGGCAUGA
((((((..(((((((.(((((((....(((....)))))))))).......))))))).....)))))).. ( -27.40)
>211555_ENSMUSG00000026294_MOUSE_330_401/1-72
CUCUCCAUGGAUAGAAGCCACACAUUUUACCAUGAAAUCUCUUUUGGAUAAACUAUCCCACAGAGGCCAUGA
.....(((((.(((((........))))))))))...(((((...(((((...)))))...)))))...... ( -15.60)
>211555_ENSDARG00000006220_ZEBRAFISH_5196_5265/1-72
AUGCCAGUGGAUGGCAGCCAUUGGUUGAGCAUGAAGAUCCUGGUGGAAGAGAUGUCUAGUAGGGGUCAUG
..((((((((.......))))))))....(((((...(((((.((((.......)))).))))).))))) ( -24.70)
>211555_SINFRUG00000153233_FUGU_2836_2905/1-72
UGCCUGUGGAUGGAAGCCACUGGCUCAGCAUGAAGAUACUGGUGAAGGAGCUGGUCCAGAGGGGCCACGA
..(((.(((((((...)))(..((((..(((.(......).)))...))))..))))).)))........ ( -22.90)
>211555_ENSRNOG00000018740_RAT_985_1055/1-72
GUGCCUGUGGAUAGGAGCCACAAGUGUACCAUGAAAUCUCUUUUGGGUAAACUGGCCCACAGAGGCCAUGA
((((((((((.......)))).)).))))((((...(((((..(((((......))))).))))).)))). ( -23.50)
>consensus
GUGCCCGUGGAUGGAAGCCACUGGUUC_ACCAUGAAGUCUCUGGUGGAGAAACUGGCCCACAGGGGCCAUGA
..(((.((((.......)))).))).....((((....((((...((.........))...))))..)))). ( -6.64 =  -6.88 +   0.24) 

211555.rnaz

RNAalifold consensus structure

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