Index >

Results for CNB 481656_4-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       ACGGCTCGGTTCACATCGGGAGAGCCGGGTTAGAAAGAAGGAGACTCCAGAGAAAATATC
481656_ENSG00000119866_HUMAN_9496_9947/1-454        ACGGCTCGGTTCACATCGGGAGAGCCGGGTTAGAAAGAAGGAGACTCCAGAGAAAATATC
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     -CGGCTCGGTTCACATCGGGAGAGCCGGGTTAGAAAGAAGGAGACTCCAGAGAAAATATC
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 -CAGCTCGGTTCACATCGGGAGAGCCGGGTTAGA---AAGGAGACTCCAGAGAAAATATC
                                                     * *******************************   ***********************


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       TTCATCAGTGCCTTTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCGCAGGGA
481656_ENSG00000119866_HUMAN_9496_9947/1-454        TTCATCAGTGCCTTTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCGCAGGGA
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     TTCATCAGTGCCTTTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCGCAGGGA
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 TTCATCAATGCC-TTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCGCAGGGA
                                                    ******* **** ***********************************************


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       AGATGAATTGTGGGAGAGCCGTCATGGC----------NNNNNNNNNNNNNNAAGAAAAA
481656_ENSG00000119866_HUMAN_9496_9947/1-454        AGATGAATTGTGGGAGAGCCGTCATGGCTTTTTTTTAAGCNNNNNNNNNNNNNNNNNNNN
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     AGATGAATTGTGGGAGAGCCGTCATGGC---------------NNNNNNNNNNNNAAGGA
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 AGATGGATTGTGGGATAGCCGTCATGGC---------------TTTTTTGAAAAGAGAGA
                                                    ***** ********* ************                                


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       AAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAA
481656_ENSG00000119866_HUMAN_9496_9947/1-454        NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAA
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     AAAA------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAA
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 GAGA------------------------------------------------GAGATG-A
                                                                                                            ** *


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       AAAAATGGCAAAAG
481656_ENSG00000119866_HUMAN_9496_9947/1-454        AAAAATGGCAAAAG
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     AAAAATGGCAAAAG
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 AAAAATGGCAAAAG
                                                    **************

481656_4-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 254
 Mean pairwise identity:  78.07
 Mean single sequence MFE: -45.68
 Consensus MFE: -37.89
 Energy contribution: -40.21
 Covariance contribution:   2.31
 Mean z-score:  -2.41
 Structure conservation index:   0.83
 SVM decision value:   2.62
 SVM RNA-class probability: 0.995865
 Prediction: RNA

######################################################################

>481656_ENSRNOG00000007049_RAT_9511_9952/1-454
ACGGCUCGGUUCACAUCGGGAGAGCCGGGUUAGAAAGAAGGAGACUCCAGAGAAAAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGCNNNNNNNNNNNNNNAAGAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAG
(((((((..((((((((.((((..((.............))...)))).)).....(((((((.((.((((((((((.....)))))...((((....))))........))))).)))))))))...)))))).)))))))...................................................................................................... ( -44.82)
>481656_ENSG00000119866_HUMAN_9496_9947/1-454
ACGGCUCGGUUCACAUCGGGAGAGCCGGGUUAGAAAGAAGGAGACUCCAGAGAAAAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGCUUUUUUUUAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAG
..(((((..((((((((.((((..((.............))...)))).)).....(((((((.((.((((((((((.....)))))...((((....))))........))))).)))))))))...)))))).)))))(((((.((((......))))............................................................................(....)..)))))..... ( -47.12)
>481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454
CGGCUCGGUUCACAUCGGGAGAGCCGGGUUAGAAAGAAGGAGACUCCAGAGAAAAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGCNNNNNNNNNNNNAAGGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAG
.(((((..((((((((.((((..((.............))...)))).)).....(((((((.((.((((((((((.....)))))...((((....))))........))))).)))))))))...)))))).)))))(((((..............................................................................)))))..... ( -44.50)
>481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454
CAGCUCGGUUCACAUCGGGAGAGCCGGGUUAGAAAGGAGACUCCAGAGAAAAUAUCUUCAUCAAUGCCUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGGAUUGUGGGAUAGCCGUCAUGGCUUUUUUGAAAAGAGAGAGAGAGAGAUGAAAAAAUGGCAAAAG
.((((((((((.(.....).))))))))))....((....))(((.((....(((((((.((..((((((((.....))))....((((....))))........))))..)))))))))..)).)))....((((((((..(((((((.........)))))))..)))).....))))..... ( -46.30)
>consensus
_CGGCUCGGUUCACAUCGGGAGAGCCGGGUUAGAAAGAAGGAGACUCCAGAGAAAAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGC___________________________AAAGAAAAA____________________________________________________UGAAAAAAAUGGCAAAAG
..((((((((((.(.....).))))))))))........((...((((...((...(((((((.((.(((((.((((.....))))....((((....))))........))))).)))))))))..))...))))..))(((((...................................................................................................)))))..... (-37.89 = -40.21 +   2.31) 

481656_4-rev.rnaz

RNAalifold consensus structure

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