Index >

Results for CNB 461739

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

461739_ENSMUSG00000034255_MOUSE_8785_8894/1-112     -CCCTCCAGCTTCGAAGCCGAGATGGCTC-GGAGTACCTGATCCAGCACGACTCCGAAGC
461739_SINFRUG00000131017_FUGU_9484_9593/1-112      CCTCCCCAG-TTAAAAACTAAGAACGCGGTGGAATTCCTGATACAGTACGACACAGAAAG
461739_ENSRNOG00000028569_RAT_8775_8884/1-112       -CCCTCCAGCTCCGGAGCCGAGATGGCTC-AGAGTACCTGATCCAGCATGACTCAGAGGC
461739_ENSDARG00000006344_ZEBRAFISH_6913_7022/1-112 CTCATTCAGCTTAAGACTCGGACTGGTGC-CGAATACTTGATCCAGTACGACACCGATAG
                                                          *** *    *         *     ** * * **** *** * *** * **   


461739_ENSMUSG00000034255_MOUSE_8785_8894/1-112     CATCATCAGCACCTGGCACAAAGCCATTGCCGAAGGCATCTCAGAGCTGGTA
461739_SINFRUG00000131017_FUGU_9484_9593/1-112      CATCATTGTTGACTGGCACCGAGTCCTGACCGATACCATACGACAACTGGT-
461739_ENSRNOG00000028569_RAT_8775_8884/1-112       CATCATCAGCACCTGGCACAAGGCCATTGCCGAAGGCATCGAGGAGCTGGTA
461739_ENSDARG00000006344_ZEBRAFISH_6913_7022/1-112 CATCATCCAAGACTGGCATAAAGTTATCTTAGATACCATACACCAGCTGGT-
                                                    ******      ******    *   *    **   ***     * ***** 


//

461739.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 112
 Mean pairwise identity:  65.37
 Mean single sequence MFE: -36.25
 Consensus MFE: -16.50
 Energy contribution: -18.75
 Covariance contribution:   2.25
 Mean z-score:  -2.29
 Structure conservation index:   0.46
 SVM decision value:   1.60
 SVM RNA-class probability: 0.966849
 Prediction: RNA

######################################################################

>461739_ENSMUSG00000034255_MOUSE_8785_8894/1-112
CCCUCCAGCUUCGAAGCCGAGAUGGCUCGGAGUACCUGAUCCAGCACGACUCCGAAGCCAUCAUCAGCACCUGGCACAAAGCCAUUGCCGAAGGCAUCUCAGAGCUGGUA
....((((((..((.(((..(((((((((((((..(((...)))....)))))).))))))).((.(((..((((.....)))).))).)).)))...))..)))))).. ( -49.40)
>461739_SINFRUG00000131017_FUGU_9484_9593/1-112
CCUCCCCAGUUAAAAACUAAGAACGCGGUGGAAUUCCUGAUACAGUACGACACAGAAAGCAUCAUUGUUGACUGGCACCGAGUCCUGACCGAUACCAUACGACAACUGGU
.....((((((........((.((.((((((....)).....((((.(((((..((.....))..)))))))))..)))).)).))...((........))..)))))). ( -23.90)
>461739_ENSRNOG00000028569_RAT_8775_8884/1-112
CCCUCCAGCUCCGGAGCCGAGAUGGCUCAGAGUACCUGAUCCAGCAUGACUCAGAGGCCAUCAUCAGCACCUGGCACAAGGCCAUUGCCGAAGGCAUCGAGGAGCUGGUA
....((((((((.(((((..((((((((.((((..(((...)))....)))).)).)))))).((.(((..((((.....)))).))).)).))).))..)))))))).. ( -48.70)
>461739_ENSDARG00000006344_ZEBRAFISH_6913_7022/1-112
CUCAUUCAGCUUAAGACUCGGACUGGUGCCGAAUACUUGAUCCAGUACGACACCGAUAGCAUCAUCCAAGACUGGCAUAAAGUUAUCUUAGAUACCAUACACCAGCUGGU
.....((((((......(((.(((((...(((....)))..))))).)))....((((((...(((((....))).))...))))))................)))))). ( -23.00)
>consensus
_CCCUCCAGCUUAAAAGCCGAGAUGGCGC_GGAAUACCUGAUCCAGCACGACACAGAAACCAUCAUCAGCAACUGGCACAAAGCCAUUGCCGAAACCAUACAACAGCUGGU_
.....(((((((.........(((((((...((((..(((...)))....))))...))))))).((.((((.((((.....)))))))).))..........))))))).. (-16.50 = -18.75 +   2.25) 

461739.rnaz

RNAalifold consensus structure

PS | PDF	PS | PDF