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Results for CNB 264064

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

264064_ENSG00000185045_HUMAN_8837_8930/1-95        GCCATGGTTTCCACTCCTGAGAACCACCAGACTTTCATCAACTCAGTCATCAAATTCCTG
264064_ENSMUSG00000043873_MOUSE_5466_5558/1-95     -CCATGGTCTCCACTCCACACAACCAACAGACTTTCATTAACTCAGCCATCAAATTCCTG
264064_SINFRUG00000153198_FUGU_1697_1791/1-95      ACAATGGTGTCAACACAAACCAGCAGAAGCAAATTCATCCAGTCCTCCATCAAACAGCTG
264064_ENSRNOG00000016972_RAT_9907_10000/1-95      ACCATGGTTTCCACTTCTCAGAACCGCCAGACCTTTATTACCTCAGTCATCAAATTCCTG
264064_ENSDARG00000015959_ZEBRAFISH_3852_3945/1-95 AACATGGTGGCGACTCCAGAAAACCGCAAAGCTTTCATCCGCAATGCATTATTGTTCCTG
                                                      *****  * **       * *         ** **           *       ***


264064_ENSG00000185045_HUMAN_8837_8930/1-95        CGCCAGTATGAGTTTGACGGGCTGGACTTTGACT-
264064_ENSMUSG00000043873_MOUSE_5466_5558/1-95     CGCCAGTATGGGTTTGATGGACTGAACCTGGACT-
264064_SINFRUG00000153198_FUGU_1697_1791/1-95      AGAAAATACGGATTTGATGGCCTGGATCTGGACTG
264064_ENSRNOG00000016972_RAT_9907_10000/1-95      CGACAGTATGGGTTTGATGGACTGGACCTGGACT-
264064_ENSDARG00000015959_ZEBRAFISH_3852_3945/1-95 CGGCTCCATGAGTTTGACGGCATGGACATTGACT-
                                                    *     * *  ***** **  ** *  * **** 


//

264064.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 95
 Mean pairwise identity:  68.22
 Mean single sequence MFE: -24.86
 Consensus MFE:  -8.80
 Energy contribution: -11.16
 Covariance contribution:   2.36
 Mean z-score:  -1.85
 Structure conservation index:   0.35
 SVM decision value:   0.33
 SVM RNA-class probability: 0.690229
 Prediction: RNA

######################################################################

>264064_ENSG00000185045_HUMAN_8837_8930/1-95
GCCAUGGUUUCCACUCCUGAGAACCACCAGACUUUCAUCAACUCAGUCAUCAAAUUCCUGCGCCAGUAUGAGUUUGACGGGCUGGACUUUGACU
....(((((..((....))..)))))...........((((.((((((.((((((((.(((....))).))))))))..))))))...)))).. ( -25.10)
>264064_ENSMUSG00000043873_MOUSE_5466_5558/1-95
CCAUGGUCUCCACUCCACACAACCAACAGACUUUCAUUAACUCAGCCAUCAAAUUCCUGCGCCAGUAUGGGUUUGAUGGACUGAACCUGGACU
(((.(((.....................(.....)......(((((((((((((((.(((....))).))))))))))).))))))))))... ( -25.80)
>264064_SINFRUG00000153198_FUGU_1697_1791/1-95
ACAAUGGUGUCAACACAAACCAGCAGAAGCAAAUUCAUCCAGUCCUCCAUCAAACAGCUGAGAAAAUACGGAUUUGAUGGCCUGGAUCUGGACUG
....((((..........))))((....)).......((((((((.((((((((...(((........))).))))))))...))).)))))... ( -26.10)
>264064_ENSRNOG00000016972_RAT_9907_10000/1-95
ACCAUGGUUUCCACUUCUCAGAACCGCCAGACCUUUAUUACCUCAGUCAUCAAAUUCCUGCGACAGUAUGGGUUUGAUGGACUGGACCUGGACU
.(((.(((((..........))))).................(((((((((((((((.(((....))).))))))))).))))))...)))... ( -24.50)
>264064_ENSDARG00000015959_ZEBRAFISH_3852_3945/1-95
AACAUGGUGGCGACUCCAGAAAACCGCAAAGCUUUCAUCCGCAAUGCAUUAUUGUUCCUGCGGCUCCAUGAGUUUGACGGCAUGGACAUUGACU
..((((.(((.....))).....(((..((((((....(((((..(((....)))...)))))......))))))..))))))).......... ( -22.80)
>consensus
ACCAUGGUGUCCACUCCACACAACCGCCAGACUUUCAUCAACUCAGCCAUCAAAUUCCUGCGACAGUAUGGGUUUGAUGGACUGGACCUGGACU_
....((((..............))))................(((((((((((((((.(((....))).))))))))))).)))).......... ( -8.80 = -11.16 +   2.36) 

264064.rnaz

RNAalifold consensus structure

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