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Results for CNB 238163-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


238163_ENSG00000170166_HUMAN_8676_8778/1-103        TGAAGTTTTTGCATCGACCATATATTCCCCTAGAATCGAATCTGTGACTATACGGATACC
238163_ENSMUSG00000042464_MOUSE_8776_8878/1-103     TGAAGTTTTTGCATCGACCATATATTCCCCTAGAATCGAATCTGTGACTATGTGGGTACC
238163_ENSDARG00000010540_ZEBRAFISH_5242_5342/1-103 -GAAGTTATTGCATCGACCATATACTCCCCTAGAATCGAATCTGTGAATGTTATTTTTTC
238163_SINFRUG00000124775_FUGU_7733_7833/1-103      -GAAGATTTTTCATCGCCCATATACTCCCCTAGAATCGAATCTGTGACTTTGACGCCATC
238163_ENSRNOG00000001578_RAT_8762_8863/1-103       TGAAGTTTTTGCATCGACCATATATTCCCCTAGAATCGAATCTGTGACTATGTGGGTACC
                                                     **** * ** ***** ******* ********************** * *        *


238163_ENSG00000170166_HUMAN_8676_8778/1-103        ACACAAATTCGGTTCTACAGGGTATATATAGACAACGTTACAA
238163_ENSMUSG00000042464_MOUSE_8776_8878/1-103     ACACAAATTCGGTTCTACAGGGTATATATAGACAACGTTACAA
238163_ENSDARG00000010540_ZEBRAFISH_5242_5342/1-103 ACACAAATTCGGTTCTACAGGGTATATATAGACGACGGCATA-
238163_SINFRUG00000124775_FUGU_7733_7833/1-103      ACACAAATTCGGTTCTACAGGGTATATATAGACGACGGCA-AG
238163_ENSRNOG00000001578_RAT_8762_8863/1-103       ACACAAATTCGGTTCTACAGGGTATATATAGACAACGTTACA-
                                                    ********************************* ***  * * 

238163-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 103
 Mean pairwise identity:  88.23
 Mean single sequence MFE: -27.20
 Consensus MFE: -24.38
 Energy contribution: -24.46
 Covariance contribution:   0.08
 Mean z-score:  -2.83
 Structure conservation index:   0.90
 SVM decision value:   3.81
 SVM RNA-class probability: 0.999628
 Prediction: RNA

######################################################################

>238163_ENSG00000170166_HUMAN_8676_8778/1-103
UGAAGUUUUUGCAUCGACCAUAUAUUCCCCUAGAAUCGAAUCUGUGACUAUACGGAUACCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACAACGUUACAA
.((.((....)).))....((((((.(((.(((((((((((.((((..(((....)))...)))).)))))))))))..))).)))))).............. ( -25.10)
>238163_ENSMUSG00000042464_MOUSE_8776_8878/1-103
UGAAGUUUUUGCAUCGACCAUAUAUUCCCCUAGAAUCGAAUCUGUGACUAUGUGGGUACCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACAACGUUACAA
.((.((....)).))....((((((.(((.(((((((((((.(((((((.....)))....)))).)))))))))))..))).)))))).............. ( -25.90)
>238163_ENSDARG00000010540_ZEBRAFISH_5242_5342/1-103
GAAGUUAUUGCAUCGACCAUAUACUCCCCUAGAAUCGAAUCUGUGAAUGUUAUUUUUUCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACGACGGCAUA
........(((.(((.(.(((((..(((.(((((((((((.((((((.........))))))...)))))))))))..)))..))))).).)))..))).. ( -30.50)
>238163_SINFRUG00000124775_FUGU_7733_7833/1-103
GAAGAUUUUUCAUCGCCCAUAUACUCCCCUAGAAUCGAAUCUGUGACUUUGACGCCAUCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACGACGGCAAG
((.((....)).))(((.((((((.((..(((((((((((.((((....((....))...)))).)))))))))))..))))))))...(....))))... ( -28.60)
>238163_ENSRNOG00000001578_RAT_8762_8863/1-103
UGAAGUUUUUGCAUCGACCAUAUAUUCCCCUAGAAUCGAAUCUGUGACUAUGUGGGUACCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACAACGUUACA
.((.((....)).))....((((((.(((.(((((((((((.(((((((.....)))....)))).)))))))))))..))).))))))............. ( -25.90)
>consensus
UGAAGUUUUUGCAUCGACCAUAUAUUCCCCUAGAAUCGAAUCUGUGACUAUGAGGGUACCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACAACGUUACA_
.((.((....)).))....((((((.(((.(((((((((((.((((...............)))).)))))))))))..))).)))))).............. (-24.38 = -24.46 +   0.08) 

238163-rev.rnaz

RNAalifold consensus structure

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