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Results for CNB 233687-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


233687_ENSG00000154358_HUMAN_7192_7277/1-86      TTCCCGTCCTTGTACCACATCACCTCCGTCTGGGCCTGAGCCACCTCGCAGCTGAGTGTG
233687_ENSMUSG00000020452_MOUSE_3372_3457/1-86   TTCCCGTCCTTGAACCATGTCACCTCAGTCTGGGCCTGGGCCACCTCGCAGCTCAGTGTG
233687_ENSDARG00000022108_ZEBRAFISH_735_818/1-86 -TCTTATTTTTCCTCCAGATGACTTTGGCTCCAGACTTGGCAAGTTCACACCGAAACACT
233687_ENSRNOG00000008975_RAT_3479_3564/1-86     TTCCCATCCTTGAACCATGTCACCTCAGTCTGGGCCTGGGCCACCTCACAGCTCAGTGTG
233687_SINFRUG00000147616_FUGU_1538_1623/1-86    TTGCCATCTTTGTACCATTTCACTTCTGTTTTCCTATCGGCTACTTCACAGCTCAGAGTG
                                                  *    *  **   ***  * ** *  *        *  ** *  ** ** *  *     


233687_ENSG00000154358_HUMAN_7192_7277/1-86      GTGCTGGCCCCCGCCTGGGCCTGCAC
233687_ENSMUSG00000020452_MOUSE_3372_3457/1-86   GCACTGGCCCCCGCCTCTGCCTTCAC
233687_ENSDARG00000022108_ZEBRAFISH_735_818/1-86 GCATTTTCCCCAGTTTCAGTTTCCA-
233687_ENSRNOG00000008975_RAT_3479_3564/1-86     GCACTGGCCCCGGCCTCTGCCTTCAC
233687_SINFRUG00000147616_FUGU_1538_1623/1-86    GCTCTCTGGGACAAGATGGCTTTCAC
                                                 *   *             *  * ** 

233687-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 86
 Mean pairwise identity:  63.95
 Mean single sequence MFE: -23.52
 Consensus MFE: -13.78
 Energy contribution: -13.14
 Covariance contribution:  -0.64
 Mean z-score:  -1.41
 Structure conservation index:   0.59
 SVM decision value:   0.42
 SVM RNA-class probability: 0.728790
 Prediction: RNA

######################################################################

>233687_ENSG00000154358_HUMAN_7192_7277/1-86
UUCCCGUCCUUGUACCACAUCACCUCCGUCUGGGCCUGAGCCACCUCGCAGCUGAGUGUGGUGCUGGCCCCCGCCUGGGCCUGCAC
...........(((((((((((.((.((....(((....)))....)).)).))).)))))))).(((((......)))))..... ( -32.20)
>233687_ENSMUSG00000020452_MOUSE_3372_3457/1-86
UUCCCGUCCUUGAACCAUGUCACCUCAGUCUGGGCCUGGGCCACCUCGCAGCUCAGUGUGGCACUGGCCCCCGCCUCUGCCUUCAC
...........................((..((((..((((((((.(((......))).))...))))))..))))..))...... ( -23.90)
>233687_ENSDARG00000022108_ZEBRAFISH_735_818/1-86
UCUUAUUUUUCCUCCAGAUGACUUUGGCUCCAGACUUGGCAAGUUCACACCGAAACACUGCAUUUUCCCCAGUUUCAGUUUCCA
................(..((((..((((...((....(((..(((.....)))....)))....))...))))..))))..). (  -8.90)
>233687_ENSRNOG00000008975_RAT_3479_3564/1-86
UUCCCAUCCUUGAACCAUGUCACCUCAGUCUGGGCCUGGGCCACCUCACAGCUCAGUGUGGCACUGGCCCCGGCCUCUGCCUUCAC
...........................((..(((((.((((((((.(((......))).))...)))))).)))))..))...... ( -28.70)
>233687_SINFRUG00000147616_FUGU_1538_1623/1-86
UUGCCAUCUUUGUACCAUUUCACUUCUGUUUUCCUAUCGGCUACUUCACAGCUCAGAGUGGCUCUCUGGGACAAGAUGGCUUUCAC
..((((((((.((.((......................((((.......))))(((((.....)))))))))))))))))...... ( -23.90)
>consensus
UUCCCAUCCUUGAACCAUAUCACCUCAGUCUGGGCCUGGGCCACCUCACAGCUCAGUGUGGCACUGGCCCCCGCCUCGGCCUUCAC
...............................(((((...(((((((........)).)))))...)))))................ (-13.78 = -13.14 +  -0.64) 

233687-rev.rnaz

RNAalifold consensus structure

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