Index >

Results for CNB 469885-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


469885_ENSG00000169840_HUMAN_9566_9739/1-175        CTACGCCAGGAGCGGCCGGGGCCTCTCAATAGGGTTTTTGTGCCTTTTCTCTTGGCATTC
469885_SINFRUG00000149945_FUGU_9675_9844/1-175      -TACGCTGTAAGCGGCCAAAAGCTCTCAATAGGG-TTTTGTGCC-TTTCTCTCGGCATTC
469885_ENSRNOG00000000952_RAT_9566_9739/1-175       CTACGCCAGGAGCGGCCGGGGCCTCTCAATAGGGTTTTTGTGCCCTTTCTCTTGGCATTC
469885_ENSDARG00000026734_ZEBRAFISH_9427_9598/1-175 TTACGCTACTAGCGGCTGAGAGCTCTCAATAGGG-TTTTGTGCCTTTTCTCTCGGCATTC
                                                     *****    ******      ************ ********* ******* *******


469885_ENSG00000169840_HUMAN_9566_9739/1-175        ACTCTGCACGCTTCCTCATTATTTCACTTGTTAACTAAATGAACTGCATAATGTACTCTA
469885_SINFRUG00000149945_FUGU_9675_9844/1-175      CCACTGCACGCTTCCCCATTATTTCACTTGTTAACTAAATGAACTGCATAATGTAGTCTA
469885_ENSRNOG00000000952_RAT_9566_9739/1-175       ACTCTGCACGCTTCCTCATTATTTCACTTGTTAACTAAATGAACTGCATAATGTACTCTA
469885_ENSDARG00000026734_ZEBRAFISH_9427_9598/1-175 ACTCTGCACGCTTCCCTATTATTTCACTTGTTAACTAAATGAACTGCATAATGTAGTCTA
                                                     * ************  ************************************** ****


469885_ENSG00000169840_HUMAN_9566_9739/1-175        TTCTTGTCAACCCCACCCACGCCGTAACAGGCGCCCTCGCCCCCTCCTCTCCC-T
469885_SINFRUG00000149945_FUGU_9675_9844/1-175      TTCTTGTCAGCCCCACCCACGCCGCAAGAGGCG-GCACTGCCCATTCTCTCTT-T
469885_ENSRNOG00000000952_RAT_9566_9739/1-175       TTCTTGTCAACCCCACCCACGCCGTAACAGGCGCACTCGCCCCCTCCTCTTCCC-
469885_ENSDARG00000026734_ZEBRAFISH_9427_9598/1-175 TTCTTGTCAGCCCCACCCACACTGCAAGAGGCG-GTACTGCCCCTTCTCCCTT-T
                                                    ********* ********** * * ** *****    *  *** * ***      

469885-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 175
 Mean pairwise identity:  86.41
 Mean single sequence MFE: -40.18
 Consensus MFE: -28.88
 Energy contribution: -28.88
 Covariance contribution:   0.00
 Mean z-score:  -1.56
 Structure conservation index:   0.72
 SVM decision value:   0.14
 SVM RNA-class probability: 0.602686
 Prediction: RNA

######################################################################

>469885_ENSG00000169840_HUMAN_9566_9739/1-175
CUACGCCAGGAGCGGCCGGGGCCUCUCAAUAGGGUUUUUGUGCCUUUUCUCUUGGCAUUCACUCUGCACGCUUCCUCAUUAUUUCACUUGUUAACUAAAUGAACUGCAUAAUGUACUCUAUUCUUGUCAACCCCACCCACGCCGUAACAGGCGCCCUCGCCCCCUCCUCUCCCU
........((((.((..(((((.....((((((((..((((((...........(((.......)))...............((((.(((.....))).))))..))))))...)))))))).................((((......)))).....)))))..)).)))).. ( -43.20)
>469885_SINFRUG00000149945_FUGU_9675_9844/1-175
UACGCUGUAAGCGGCCAAAAGCUCUCAAUAGGGUUUUGUGCCUUUCUCUCGGCAUUCCCACUGCACGCUUCCCCAUUAUUUCACUUGUUAACUAAAUGAACUGCAUAAUGUAGUCUAUUCUUGUCAGCCCCACCCACGCCGCAAGAGGCGGCACUGCCCAUUCUCUCUUU
...((((.(((((((..((((((((....))))))))(((((........))))).......)).)))))........................((((.(((((.....))))).)))).....)))).........(((((.....))))).................. ( -39.30)
>469885_ENSRNOG00000000952_RAT_9566_9739/1-175
CUACGCCAGGAGCGGCCGGGGCCUCUCAAUAGGGUUUUUGUGCCCUUUCUCUUGGCAUUCACUCUGCACGCUUCCUCAUUAUUUCACUUGUUAACUAAAUGAACUGCAUAAUGUACUCUAUUCUUGUCAACCCCACCCACGCCGUAACAGGCGCACUCGCCCCCUCCUCUUCCC
.......(((((.(((.((((...(..((((((((..((((((...........(((.......)))...............((((.(((.....))).))))..))))))...))))))))...)....)))).....((((......)))).....)))..)))))...... ( -40.90)
>469885_ENSDARG00000026734_ZEBRAFISH_9427_9598/1-175
UUACGCUACUAGCGGCUGAGAGCUCUCAAUAGGGUUUUGUGCCUUUUCUCUCGGCAUUCACUCUGCACGCUUCCCUAUUAUUUCACUUGUUAACUAAAUGAACUGCAUAAUGUAGUCUAUUCUUGUCAGCCCCACCCACACUGCAAGAGGCGGUACUGCCCCUUCUCCCUUU
....((....((((((((((....))))..(((((...(((((.........)))))..))))))).))))..........((((.(((.....))).))))..)).....(((((((.((((((.(((...........)))))))))..)).)))))............. ( -37.30)
>consensus
CUACGCCAGGAGCGGCCGAGACCUCUCAAUAGGG_UUUUGUGCCUUUUCUCUCGGCAUUCACUCUGCACGCUUCCCCAUUAUUUCACUUGUUAACUAAAUGAACUGCAUAAUGUACUCUAUUCUUGUCAACCCCACCCACGCCGCAACAGGCG_GCACGCCCCCUCCUCUCCC_U
....((((((((.((((((((.((((....)))).))))).)))....)))))))).................................(((.((..((((.(((((.....))))).))))...)).)))........((((......))))...................... (-28.88 = -28.88 +   0.00) 

469885-rev.rnaz

RNAalifold consensus structure

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