Index >

Results for CNB 481656_4

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            CTTTTGCCATTTTTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
481656_ENSG00000119866_HUMAN_9496_9947/1-454             CTTTTGCCATTTTTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          CTTTTGCCATTTTTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      CTTTTGCCATTTTTT-CATCTC--------------------------------------


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            NNNNNNNNNNTTTTTTTTTCTTNNNNNNNNNNNNNN----------GCCATGACGGCTCT
481656_ENSG00000119866_HUMAN_9496_9947/1-454             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTAAAAAAAAGCCATGACGGCTCT
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          NNTT------TTTTTCCTTNNNNNNNNNNNN---------------GCCATGACGGCTCT
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      ----------TCTCTCTCTCTTTTCAAAAAA---------------GCCATGACGGCTAT


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            CCCACAATTCATCTTCCCTGCGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAA
481656_ENSG00000119866_HUMAN_9496_9947/1-454             CCCACAATTCATCTTCCCTGCGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAA
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          CCCACAATTCATCTTCCCTGCGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAA
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      CCCACAATCCATCTTCCCTGCGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAA


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            AAGGCACTGATGAAGATATTTTCTCTGGAGTCTCCTTCTTTCTAACCCGGCTCTCCCGAT
481656_ENSG00000119866_HUMAN_9496_9947/1-454             AAGGCACTGATGAAGATATTTTCTCTGGAGTCTCCTTCTTTCTAACCCGGCTCTCCCGAT
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          AAGGCACTGATGAAGATATTTTCTCTGGAGTCTCCTTCTTTCTAACCCGGCTCTCCCGAT
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      A-GGCATTGATGAAGATATTTTCTCTGGAGTCTCCTT---TCTAACCCGGCTCTCCCGAT


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            GTGAACCGAGCCGT
481656_ENSG00000119866_HUMAN_9496_9947/1-454             GTGAACCGAGCCGT
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          GTGAACCGAGCCG-
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      GTGAACCGAGCTG-

481656_4.aln

RNAz output


############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 254
 Mean pairwise identity:  78.07
 Mean single sequence MFE: -34.34
 Consensus MFE: -32.60
 Energy contribution: -32.47
 Covariance contribution:  -0.13
 Mean z-score:  -1.12
 Structure conservation index:   0.95
 SVM decision value:   1.04
 SVM RNA-class probability: 0.905807
 Prediction: RNA

######################################################################

>481656_ENSRNOG00000007049_RAT_9511_9952/1-454
CUUUUGCCAUUUUUUUCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUUUUUUUUCUUNNNNNNNNNNNNNNGCCAUGACGGCUCUCCCACAAUUCAUCUUCCCUGCGCCAUCUUUGUAUUAUUUCUAAUUUAUUUUGGAUGUCAAAAGGCACUGAUGAAGAUAUUUUCUCUGGAGUCUCCUUCUUUCUAACCCGGCUCUCCCGAUGUGAACCGAGCCGU
......................................................................................................(((((((...((((....((((((...(.(((...((((.((....(((((......))))).)))))).))).)....))))))......((.((((...((.............))..)))).))))))....))))))) ( -35.52)
>481656_ENSG00000119866_HUMAN_9496_9947/1-454
CUUUUGCCAUUUUUUUCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCUUAAAAAAAAGCCAUGACGGCUCUCCCACAAUUCAUCUUCCCUGCGCCAUCUUUGUAUUAUUUCUAAUUUAUUUUGGAUGUCAAAAGGCACUGAUGAAGAUAUUUUCUCUGGAGUCUCCUUCUUUCUAACCCGGCUCUCCCGAUGUGAACCGAGCCGU
..............................................................................................((((......))))....(((((((...((((....((((((...(.(((...((((.((....(((((......))))).)))))).))).)....))))))......((.((((...((.............))..)))).))))))....))))))) ( -37.82)
>481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454
CUUUUGCCAUUUUUUUCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUUUUUUCCUUNNNNNNNNNNNNGCCAUGACGGCUCUCCCACAAUUCAUCUUCCCUGCGCCAUCUUUGUAUUAUUUCUAAUUUAUUUUGGAUGUCAAAAGGCACUGAUGAAGAUAUUUUCUCUGGAGUCUCCUUCUUUCUAACCCGGCUCUCCCGAUGUGAACCGAGCCG
............................................................................................((((((...((((....((((((...(.(((...((((.((....(((((......))))).)))))).))).)....))))))......((.((((...((.............))..)))).))))))....)))))) ( -33.92)
>481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454
CUUUUGCCAUUUUUUCAUCUCUCUCUCUCUCUUUUCAAAAAAGCCAUGACGGCUAUCCCACAAUCCAUCUUCCCUGCGCCAUCUUUGUAUUAUUUCUAAUUUAUUUUGGAUGUCAAAGGCAUUGAUGAAGAUAUUUUCUCUGGAGUCUCCUUUCUAACCCGGCUCUCCCGAUGUGAACCGAGCUG
...............((.(((....................((((.....))))....((((....((((((.....(((...((((.((....(((((......))))).)))))))))......))))))......((.((((...((..........))..)))).))))))....))).)) ( -30.10)
>consensus
CUUUUGCCAUUUUUUUCA____________________________________________________UUUUUCUUU___________________________GCCAUGACGGCUCUCCCACAAUUCAUCUUCCCUGCGCCAUCUUUGUAUUAUUUCUAAUUUAUUUUGGAUGUCAAAAGGCACUGAUGAAGAUAUUUUCUCUGGAGUCUCCUUCUUUCUAACCCGGCUCUCCCGAUGUGAACCGAGCCG_
.................................................................................................................((((((...((((....((((((...(.(((...((((.((....(((((......))))).)))))).))).)....))))))......((.((((...((.............))..)))).))))))....)))))). (-32.60 = -32.47 +  -0.13)

481656_4.rnaz

RNAalifold consensus structure

Secondary Structure Dot Plot
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Stefan Washietl
Last modified: Thu Aug 12 14:35:44 CEST 2004