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Results for CNB 284325

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

284325_ENSG00000183386_HUMAN_8149_8251/1-109        G-AAACCTGGGCCTGAGTGGCAGGA-AGGGGGCTGAGAAAGAGGAG--TATCTTC--TCT
284325_ENSMUSG00000032643_MOUSE_8110_8210/1-109     G-AAACCAGGACCTGAATGACAGGG--GAGAGAGAAGGAGGGGCTC--TCTCCAC--CCT
284325_ENSDARG00000011937_ZEBRAFISH_4131_4233/1-109 G-AAACCTGGGCCTGAGTGGCAGGA-AGGGGGCTGAGAAAGAGGAG--TATCTTC--TCT
284325_ENSRNOG00000007541_RAT_8103_8209/1-109       -AAGACCTGAATGACGGTGGGGGGAGAGAAGGAGAGGGAAGAGGAGGTTCTCTTCATCCT
                                                      * *** *        **   **   *   *    * * * *     * **  *   **


284325_ENSG00000183386_HUMAN_8149_8251/1-109        ACACCATAGCCCCCAGCCCAGGAGTTCCAGCTCTAAAGACCCTGGCCCC
284325_ENSMUSG00000032643_MOUSE_8110_8210/1-109     TCAGCATGACCGCTACCTGAGGACTCTCCACTTTGAAGACTCCCACTT-
284325_ENSDARG00000011937_ZEBRAFISH_4131_4233/1-109 ACACCATAGCCCCCAGCCCAGGAGTTCCAGCTCTAAAGACCCTGGCCCC
284325_ENSRNOG00000007541_RAT_8103_8209/1-109       TTAGCATAACCCCTACCTGAGGACTCTCCCCTTTGAAGACTTCAGCTT-
                                                      * ***  ** * * *  **** *  *  ** * *****     *   


//

284325.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 109
 Mean pairwise identity:  65.04
 Mean single sequence MFE: -38.91
 Consensus MFE: -15.68
 Energy contribution: -18.05
 Covariance contribution:   2.37
 Mean z-score:  -2.23
 Structure conservation index:   0.40
 SVM decision value:   0.56
 SVM RNA-class probability: 0.782945
 Prediction: RNA

######################################################################

>284325_ENSG00000183386_HUMAN_8149_8251/1-109
GAAACCUGGGCCUGAGUGGCAGGAAGGGGGCUGAGAAAGAGGAGUAUCUUCUCUACACCAUAGCCCCCAGCCCAGGAGUUCCAGCUCUAAAGACCCUGGCCCC
....((((((((((.....)))...((((((((.(..(((((((...)))))))....).)))))))).))))))).(..((((.((....))..))))..). ( -43.30)
>284325_ENSMUSG00000032643_MOUSE_8110_8210/1-109
GAAACCAGGACCUGAAUGACAGGGGAGAGAGAAGGAGGGGCUCUCUCCACCCUUCAGCAUGACCGCUACCUGAGGACUCUCCACUUUGAAGACUCCCACUU
.......(((((((.....))))((((((.(((((..(((.....)))..)))))(((......))).........))))))...........)))..... ( -31.10)
>284325_ENSDARG00000011937_ZEBRAFISH_4131_4233/1-109
GAAACCUGGGCCUGAGUGGCAGGAAGGGGGCUGAGAAAGAGGAGUAUCUUCUCUACACCAUAGCCCCCAGCCCAGGAGUUCCAGCUCUAAAGACCCUGGCCCC
....((((((((((.....)))...((((((((.(..(((((((...)))))))....).)))))))).))))))).(..((((.((....))..))))..). ( -43.30)
>284325_ENSRNOG00000007541_RAT_8103_8209/1-109
AAGACCUGAAUGACGGUGGGGGGAGAGAAGGAGAGGGAAGAGGAGGUUCUCUUCAUCCUUUAGCAUAACCCCUACCUGAGGACUCUCCCCUUUGAAGACUUCAGCUU
.....(((((.......(((((((((((((((....(((((((....))))))).)))))..........(((.....))).)))))))))).......)))))... ( -37.94)
>consensus
G_AAACCUGGACCUGAGUGGCAGGA_AGAGGGAGAAGAAAGAGGAG__UAUCUUC__CCUACACCAUAACCCCCACCCCAGGACUCCCAGCUCUAAAGACCCCGGCCC_
.....((((((((((.....))))...(((((((((((..(((((.....)))))..)))......))))))))..))))))........................... (-15.68 = -18.05 +   2.37) 

284325.rnaz

RNAalifold consensus structure

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