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Results for CNB 251196

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

251196_ENSG00000082898_HUMAN_5544_5647/1-104        TTCCAAACGCTCCGCGGCGCCATGGGCTGAAAACTCAACCGAGATGGAATCTCCCAGTCT
251196_ENSMUSG00000020290_MOUSE_3674_3777/1-104     TTCCAAACGCTCCGCGGCGCCATGGGCTGAAAACTCAACCGAGATGGAATCTCCCAGTCT
251196_ENSDARG00000005555_ZEBRAFISH_6682_6782/1-104 -TCCAAACTTTTCGCGGCGCCATCGGCTGAAAACTAAACCGAGATGGAATCTCCCAGTCT
251196_ENSRNOG00000009935_RAT_4112_4214/1-104       -TCCAAACGCTCCGCGGCGCCATGGGCTGAAAACTCAACCGAGATGGAATCTCCCAGTCT
                                                     *******  * *********** *********** ************************


251196_ENSG00000082898_HUMAN_5544_5647/1-104        GAACCGGTTTCAACCGGTTCCGAGTTTGAGGCACTAGGAGGAGG
251196_ENSMUSG00000020290_MOUSE_3674_3777/1-104     GAACCGGTTTCAACCGGTTCCGAGTTTGAGGCACTAGGAGGAGG
251196_ENSDARG00000005555_ZEBRAFISH_6682_6782/1-104 GAACCGGTTTCAACCGGTTACGAGTTTGTTGCT-TGTGAGAAG-
251196_ENSRNOG00000009935_RAT_4112_4214/1-104       GAACCGGTTTCAACCGGTTCCGAGTTTGAGGCACTAGGAGGAGG
                                                    ******************* ********  **  *  *** ** 


//

251196.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 104
 Mean pairwise identity:  92.62
 Mean single sequence MFE: -37.65
 Consensus MFE: -30.09
 Energy contribution: -30.02
 Covariance contribution:  -0.06
 Mean z-score:  -1.90
 Structure conservation index:   0.80
 SVM decision value:   0.42
 SVM RNA-class probability: 0.729549
 Prediction: RNA

######################################################################

>251196_ENSG00000082898_HUMAN_5544_5647/1-104
UUCCAAACGCUCCGCGGCGCCAUGGGCUGAAAACUCAACCGAGAUGGAAUCUCCCAGUCUGAACCGGUUUCAACCGGUUCCGAGUUUGAGGCACUAGGAGGAGG
((((...((((....))))((.((((((..((((((.....((((((......))).)))((((((((....)))))))).))))))..))).))))).)))). ( -39.50)
>251196_ENSMUSG00000020290_MOUSE_3674_3777/1-104
UUCCAAACGCUCCGCGGCGCCAUGGGCUGAAAACUCAACCGAGAUGGAAUCUCCCAGUCUGAACCGGUUUCAACCGGUUCCGAGUUUGAGGCACUAGGAGGAGG
((((...((((....))))((.((((((..((((((.....((((((......))).)))((((((((....)))))))).))))))..))).))))).)))). ( -39.50)
>251196_ENSDARG00000005555_ZEBRAFISH_6682_6782/1-104
UCCAAACUUUUCGCGGCGCCAUCGGCUGAAAACUAAACCGAGAUGGAAUCUCCCAGUCUGAACCGGUUUCAACCGGUUACGAGUUUGUUGCUUGUGAGAAG
......((((((((((((((...)))....(((.((((((((((((......))).))).(((((((....))))))).)).))))))))).))))))))) ( -32.70)
>251196_ENSRNOG00000009935_RAT_4112_4214/1-104
UCCAAACGCUCCGCGGCGCCAUGGGCUGAAAACUCAACCGAGAUGGAAUCUCCCAGUCUGAACCGGUUUCAACCGGUUCCGAGUUUGAGGCACUAGGAGGAGG
(((...((((....))))((.((((((..((((((.....((((((......))).)))((((((((....)))))))).))))))..))).))))).))).. ( -38.90)
>consensus
_UCCAAACGCUCCGCGGCGCCAUGGGCUGAAAACUCAACCGAGAUGGAAUCUCCCAGUCUGAACCGGUUUCAACCGGUUCCGAGUUUGAGGCACUAGGAGGAGG
.........((((.((((.(....))))).((((((.....((((((......))).)))((((((((....)))))))).))))))............)))). (-30.09 = -30.02 +  -0.06) 

251196.rnaz

RNAalifold consensus structure

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