Index >

Results for CNB 167677-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


167677_ENSG00000148082_HUMAN_7808_7994/1-199    TGCTGTTTGTGTGAATGAAAAGGCTAGCGAGCGAGCCAGCGTTTCTGTGAATGAA-GCAG
167677_ENSMUSG00000021448_MOUSE_7437_7623/1-199 TGCTGTTTGTGTGAATGAAAGGGCCGGCGAGCGAGCCAGCGTTTCTGTGAATGGA-GCGG
167677_SINFRUG00000145101_FUGU_5665_5860/1-199  -GCCTTTTATGTGAATGAAATAGCAGGATGGCATACCAATGTTTCTGTGAATGGATGCAA
167677_ENSRNOG00000014366_RAT_7577_7762/1-199   -GCTGTTTGTGTGAATGAAAGGGCCGGCGAGCGAGCCAGCGTTTCTGTGAATGGA-GCGG
                                                 **  *** ***********  **  *   **   ***  ************* * **  


167677_ENSG00000148082_HUMAN_7808_7994/1-199    GGCCTTGCAGCCGGTGCCAGGCAATCCCCTGGGCTCCAGCGGCCTCAGCCAATGAGCGGC
167677_ENSMUSG00000021448_MOUSE_7437_7623/1-199 GTCCTTGCAGCCGGTGCCAGGCAATCCCCTGGGCTCAGGCGGCTTCAGCCAATGAGAGGC
167677_SINFRUG00000145101_FUGU_5665_5860/1-199  GGCCTTTCTGTCTCTGCAAGGCAATCCCTTGGGATGGCATGGTCTCATCCAATGAGGAGC
167677_ENSRNOG00000014366_RAT_7577_7762/1-199   GTCCTTGCAGCCGGTGCCAGGCAATCCCCTGGGCTCAGGCGGCCTCAACCAATGAGAGGC
                                                * **** * * *  *** ********** **** *     **  *** ********  **


167677_ENSG00000148082_HUMAN_7808_7994/1-199    CGCCCCGATGACTCATTCAACAAAGGCTTGCTCAATAGTGGAAGATTCCATTTCAATCAA
167677_ENSMUSG00000021448_MOUSE_7437_7623/1-199 TGAGCCGATGACTCATTCAACAAAGGCTCGCTCAATAGTGGAAGATTCCATTTCAATCAA
167677_SINFRUG00000145101_FUGU_5665_5860/1-199  CGGCGGGATGACTCATTC-AGGGAGGCTTGCAGAATAGTGGAAGAGACCATTCCAGACGC
167677_ENSRNOG00000014366_RAT_7577_7762/1-199   TGCGCCGATGACTCATTCAACAAAGGCTCGCTCAATAGTGGAAGATTCCATTTCAATCAA
                                                 *    ************ *   ***** **  ************  ***** **  *  


167677_ENSG00000148082_HUMAN_7808_7994/1-199    AGGCGGG-----------A
167677_ENSMUSG00000021448_MOUSE_7437_7623/1-199 GGGCGGG-----------A
167677_SINFRUG00000145101_FUGU_5665_5860/1-199  AGGTGTGCGTCCCCGTTT-
167677_ENSRNOG00000014366_RAT_7577_7762/1-199   GGGCGGG-----------A
                                                 ** * *            

167677-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 199
 Mean pairwise identity:  79.26
 Mean single sequence MFE: -74.28
 Consensus MFE: -50.38
 Energy contribution: -49.38
 Covariance contribution:  -1.00
 Mean z-score:  -1.99
 Structure conservation index:   0.68
 SVM decision value:   0.99
 SVM RNA-class probability: 0.895479
 Prediction: RNA

######################################################################

>167677_ENSG00000148082_HUMAN_7808_7994/1-199
UGCUGUUUGUGUGAAUGAAAAGGCUAGCGAGCGAGCCAGCGUUUCUGUGAAUGAAGCAGGGCCUUGCAGCCGGUGCCAGGCAAUCCCCUGGGCUCCAGCGGCCUCAGCCAAUGAGCGGCCGCCCCGAUGACUCAUUCAACAAAGGCUUGCUCAAUAGUGGAAGAUUCCAUUUCAAUCAAAGGCGGGA
..((((((...(((.(((((..((((..(((((((((.(((....)))((((((..((((((......((.((.((((((......))).))).)).))(((((((.....)))..))))))))...))..))))))......)))))))))..))))(((....))).))))).))).)))))).. ( -72.90)
>167677_ENSMUSG00000021448_MOUSE_7437_7623/1-199
UGCUGUUUGUGUGAAUGAAAGGGCCGGCGAGCGAGCCAGCGUUUCUGUGAAUGGAGCGGGUCCUUGCAGCCGGUGCCAGGCAAUCCCCUGGGCUCAGGCGGCUUCAGCCAAUGAGAGGCUGAGCCGAUGACUCAUUCAACAAAGGCUCGCUCAAUAGUGGAAGAUUCCAUUUCAAUCAAGGGCGGGA
.(((.(((((.(((((((((((((((((......)))..((((((.......)))))))))))))...(((.(.((((((......))).))).).)))((((.(((((.......)))))))))......)))))))))))))))((((((...((((((....))))))........)))))).. ( -76.50)
>167677_SINFRUG00000145101_FUGU_5665_5860/1-199
GCCUUUUAUGUGAAUGAAAUAGCAGGAUGGCAUACCAAUGUUUCUGUGAAUGGAUGCAAGGCCUUUCUGUCUCUGCAAGGCAAUCCCUUGGGAUGGCAUGGUCUCAUCCAAUGAGGAGCCGGCGGGAUGACUCAUUCAGGGAGGCUUGCAGAAUAGUGGAAGAGACCAUUCCAGACGCAGGUGUGCGUCCCCGUUU
((.((((((....))))))..)).(((((.((((((..(((.((((.((((((........((...((((.((((((((.(..(((((..((((((.......))))))((((((..(((....)).)..)))))).)))))).)))))))))))).))......)))))))))).))))))))))))))...... ( -72.34)
>167677_ENSRNOG00000014366_RAT_7577_7762/1-199
GCUGUUUGUGUGAAUGAAAGGGCCGGCGAGCGAGCCAGCGUUUCUGUGAAUGGAGCGGGUCCUUGCAGCCGGUGCCAGGCAAUCCCCUGGGCUCAGGCGGCCUCAACCAAUGAGAGGCUGCGCCGAUGACUCAUUCAACAAAGGCUCGCUCAAUAGUGGAAGAUUCCAUUUCAAUCAAGGGCGGGA
(((.(((((.(((((((((((((((((......)))..((((((.......))))))))))))).((..((((.(((((......)))))......((((((((.........)))))))))))).))..)))))))))))))))((((((...((((((....))))))........)))))).. ( -75.40)
>consensus
_GCUGUUUGUGUGAAUGAAAGGGCCGGCGAGCGAGCCAGCGUUUCUGUGAAUGGA_GCAGGGCCUUGCAGCCGGUGCCAGGCAAUCCCCUGGGCUCAGGCGGCCUCAGCCAAUGAGAGGCCGCCCCGAUGACUCAUUCAACAAAGGCUCGCUCAAUAGUGGAAGAUUCCAUUUCAAUCAAAGGCGGG___________A
..((((((...(((.((((.........(((((((((.(((....)))((((((..((((....))))...(((..(((((......)))))......((((((((.........)))))))).))).....))))))......)))))))))....((((......)))))))).))).))))))............. (-50.38 = -49.38 +  -1.00) 

167677-rev.rnaz

RNAalifold consensus structure

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