Index >

Results for CNB 453969

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

453969_ENSMUSG00000007817_MOUSE_796_1002/1-208       -AGGTGTGTTCCTCTTTCCAGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAAC
453969_ENSDARG00000013677_ZEBRAFISH_9793_10000/1-208 CAGGTTTGCTCCTCATTCCAGATGGGGCCTACGCAAGGCTACAACAGCCAGTTTATGAAC
453969_SINFRUG00000145892_FUGU_8334_8524/1-208       -AGATGAGCTCCTCTTTTCAGATGGCACCAAACCAGGCATACAACAGCCAGTTCATGAAC
453969_ENSRNOG00000010488_RAT_796_1002/1-208         -AGGTGTGTTCCTCTTTCCAGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAAC
                                                      ** *  * ***** ** *******  ** *  ** *  ** ******** ** ******


453969_ENSMUSG00000007817_MOUSE_796_1002/1-208       CAACCCGGGCCTCGGGGGCCTGCCTCCATGGGGGGCAGCCTGAACCCTGCCGGCATGGCA
453969_ENSDARG00000013677_ZEBRAFISH_9793_10000/1-208 CAGCCAGGGCCTCGCGGACCCCCATCCATGGCAGGAGGCATGAACCCAGCTGCTATGGGT
453969_SINFRUG00000145892_FUGU_8334_8524/1-208       CAGCCAGGGCCTCGCGGCCCCGCATC--------GCTCCCTGGAAACA-------TGGGC
453969_ENSRNOG00000010488_RAT_796_1002/1-208         CAACCCGGGCCTCGGGGGCCTGCCTCCATGGGGGGCAGCATGAACCCTGCCAGCATGGCA
                                                     ** ** ******** ** **  * **        *   * ** *  *        ***  


453969_ENSMUSG00000007817_MOUSE_796_1002/1-208       GCTGGCATGACACCCTCGGGCATGAGCGGCCCTCCCATGGGCATGAACCAGCCCCGACCA
453969_ENSDARG00000013677_ZEBRAFISH_9793_10000/1-208 GGTGGAATGAATAGCTCCAACATGAGCGGCCCACCGATGGGTATGAACCAGCCCAGAGGC
453969_SINFRUG00000145892_FUGU_8334_8524/1-208       GCAGGCATGAATGCGTCCAACATGAGTGGGCCTCCCATGGGAATGAACCAGCCCAGGGGC
453969_ENSRNOG00000010488_RAT_796_1002/1-208         GCTGGCATGACACCCTCGGGCATGAGCGGCCCTCCCATGGGCATGAACCAGCCCCGACCG
                                                     *  ** ****     **   ****** ** ** ** ***** ************ *    


453969_ENSMUSG00000007817_MOUSE_796_1002/1-208       CCCGGCATCAGCCCCTTTGGCACACACG
453969_ENSDARG00000013677_ZEBRAFISH_9793_10000/1-208 CCAGGCATGGGGCCCTTTGGTGGCCATG
453969_SINFRUG00000145892_FUGU_8334_8524/1-208       CAAGGCATGGGGCCTTTTGGTGCCCAT-
453969_ENSRNOG00000010488_RAT_796_1002/1-208         CCTGGCATCAGCCCCTTTGGCACACACG
                                                     *  *****  * ** *****    **  


//

453969.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 208
 Mean pairwise identity:  75.34
 Mean single sequence MFE: -87.43
 Consensus MFE: -48.00
 Energy contribution: -54.38
 Covariance contribution:   6.38
 Mean z-score:  -2.48
 Structure conservation index:   0.55
 SVM decision value:   1.89
 SVM RNA-class probability: 0.981465
 Prediction: RNA

######################################################################

>453969_ENSMUSG00000007817_MOUSE_796_1002/1-208
AGGUGUGUUCCUCUUUCCAGAUGGGUCCCACCCAGGCGUAUAACAGCCAAUUCAUGAACCAACCCGGGCCUCGGGGGCCUGCCUCCAUGGGGGGCAGCCUGAACCCUGCCGGCAUGGCAGCUGGCAUGACACCCUCGGGCAUGAGCGGCCCUCCCAUGGGCAUGAACCAGCCCCGACCACCCGGCAUCAGCCCCUUUGGCACACACG
..((((((........((...((((.....))))(((........))).................))(((..((((((.((((....((((((((.((((((..(.(((((((......))))))).)......)))))).......((((......))))........)))))..)))...))))...))))))..))))))))). ( -87.00)
>453969_ENSDARG00000013677_ZEBRAFISH_9793_10000/1-208
CAGGUUUGCUCCUCAUUCCAGAUGGGGCCUACGCAAGGCUACAACAGCCAGUUUAUGAACCAGCCAGGGCCUCGCGGACCCCCAUCCAUGGCAGGAGGCAUGAACCCAGCUGCUAUGGGUGGUGGAAUGAAUAGCUCCAACAUGAGCGGCCCACCGAUGGGUAUGAACCAGCCCAGAGGCCCAGGCAUGGGGCCCUUUGGUGGCCAUG
..((((...........((((..((((((.......((((.....))))..........((((((.(((((((.(((.((.(((((((((((((..((.......))..))))))))))))).))........((((......))))......))).(((((........)))))))))))).))).))))))))))))).))))... ( -91.90)
>453969_SINFRUG00000145892_FUGU_8334_8524/1-208
AGAUGAGCUCCUCUUUUCAGAUGGCACCAAACCAGGCAUACAACAGCCAGUUCAUGAACCAGCCAGGGCCUCGCGGCCCCGCAUCGCUCCCUGGAAACAUGGGCGCAGGCAUGAAUGCGUCCAACAUGAGUGGGCCUCCCAUGGGAAUGAACCAGCCCAGGGGCCAAGGCAUGGGGCCUUUUGGUGCCCAU
.((.(((...)))...))....(((((((((..((((...((...(((.((((((...(((....(((((..(((....)))..(((((..((....))((((((((........))))))))....))))))))))....)))..))))))..(((....)))...))).))..)))))))))))))... ( -79.70)
>453969_ENSRNOG00000010488_RAT_796_1002/1-208
AGGUGUGUUCCUCUUUCCAGAUGGGUCCCACCCAGGCGUAUAACAGCCAAUUCAUGAACCAACCCGGGCCUCGGGGGCCUGCCUCCAUGGGGGGCAGCAUGAACCCUGCCAGCAUGGCAGCUGGCAUGACACCCUCGGGCAUGAGCGGCCCUCCCAUGGGCAUGAACCAGCCCCGACCGCCUGGCAUCAGCCCCUUUGGCACACACG
..((((((........(((((.((((.....(((((((.......((...((((((........((((((.....))))))..((((((((((((..((((..((((((((((......))))))).((.....)))))))))....)))).))))))))))))))...))......))))))).....)))).))))).)))))). ( -91.12)
>consensus
_AGGUGUGCUCCUCUUUCCAGAUGGGUCCCACCCAGGCGUACAACAGCCAAUUCAUGAACCAACCAGGGCCUCGCGGGCCCGCAUCCAUGGGGGGCAGCAUGAACCCAGCCGGCAUGGCAGCUGGCAUGAAACCCUCCAACAUGAGCGGCCCUCCCAUGGGCAUGAACCAGCCCAGACCCCCAGGCAUCAGCCCCUUUGGCACACACG
...((((((........(((((.((((((......(((........))).............(((.((((((((((((((.((.((((((...(((((........)))))..)))))).))...((((...........))))...)))))))....((((........)))).))))))).)))..)))))).))))).)))))). (-48.00 = -54.38 +   6.38) 

453969.rnaz

RNAalifold consensus structure

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