Index >

Results for CNB 357706

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

357706_ENSG00000162039_HUMAN_8882_8958/1-78        -AGGTTGGAGAGCCAAAATACTTTACAACTTCAGACCGGAGAAAAGGCCAGAGGTGTGAA
357706_ENSMUSG00000024155_MOUSE_8790_8866/1-78     -AGGTTGGAGAACCAAAATACTTTACAACTTCAGACCGAAGAAAAGGCCAGAGATGTGAG
357706_SINFRUG00000133821_FUGU_9282_9358/1-78      CAGATTGGAGAGTTGAAATATTTCACGACTTCAGACAGACGCAACGGCCACAGGCTGGAA
357706_ENSDARG00000018394_ZEBRAFISH_6803_6879/1-78 -AGGTTGGAGAGGAGAAATTCTTTACAAAATCTGGTGGCTGCAAAGGACAGAGAATTGAA
357706_ENSRNOG00000014711_RAT_8626_8702/1-78       TAGGTTGGAGAGCCAAAGTACTTTACAACTTCAGACCGAAGAAAAGGCCAGAGGTGTGAG
                                                    ** *******    ** *  ** ** *  ** *   *  * ** ** ** **    ** 


357706_ENSG00000162039_HUMAN_8882_8958/1-78        GTTAGACTCTATGATGAA
357706_ENSMUSG00000024155_MOUSE_8790_8866/1-78     GTTAAACTCTTTGATGAA
357706_SINFRUG00000133821_FUGU_9282_9358/1-78      GCGAAGCTGTTTGACGA-
357706_ENSDARG00000018394_ZEBRAFISH_6803_6879/1-78 ATAAAACTCTTCGATGAC
357706_ENSRNOG00000014711_RAT_8626_8702/1-78       GTTAAACTCTTTGATGA-
                                                      *  ** *  ** ** 


//

357706.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 78
 Mean pairwise identity:  75.52
 Mean single sequence MFE: -19.18
 Consensus MFE:  -9.24
 Energy contribution: -11.56
 Covariance contribution:   2.32
 Mean z-score:  -1.98
 Structure conservation index:   0.48
 SVM decision value:   0.77
 SVM RNA-class probability: 0.845641
 Prediction: RNA

######################################################################

>357706_ENSG00000162039_HUMAN_8882_8958/1-78
AGGUUGGAGAGCCAAAAUACUUUACAACUUCAGACCGGAGAAAAGGCCAGAGGUGUGAAGUUAGACUCUAUGAUGAA
..((((.((((.(.....((((((((.((((.(.((........)).).))))))))))))..).)))).))))... ( -17.50)
>357706_ENSMUSG00000024155_MOUSE_8790_8866/1-78
AGGUUGGAGAACCAAAAUACUUUACAACUUCAGACCGAAGAAAAGGCCAGAGAUGUGAGGUUAAACUCUUUGAUGAA
..((..((((........((((((((.(((..(.((........)))..))).)))))))).....))))..))... ( -17.52)
>357706_SINFRUG00000133821_FUGU_9282_9358/1-78
CAGAUUGGAGAGUUGAAAUAUUUCACGACUUCAGACAGACGCAACGGCCACAGGCUGGAAGCGAAGCUGUUUGACGA
....(((..((((......))))..)))(.((((((((.(((..(((((...)))))...)))...)))))))).). ( -22.80)
>357706_ENSDARG00000018394_ZEBRAFISH_6803_6879/1-78
AGGUUGGAGAGGAGAAAUUCUUUACAAAAUCUGGUGGCUGCAAAGGACAGAGAAUUGAAAUAAAACUCUUCGAUGAC
..((((((((((((.....)))..(((..((((....((.....)).))))...)))........)))))))))... ( -16.00)
>357706_ENSRNOG00000014711_RAT_8626_8702/1-78
UAGGUUGGAGAGCCAAAGUACUUUACAACUUCAGACCGAAGAAAAGGCCAGAGGUGUGAGGUUAAACUCUUUGAUGA
...((..(((((.......((((((((.((((.(.((........)).).))))))))))))....)))))..)).. ( -22.10)
>consensus
_AGGUUGGAGAGCCAAAAUACUUUACAACUUCAGACCGAAGAAAAGGCCAGAGGUGUGAAGUUAAACUCUUUGAUGA_
...(((((((((.......((((((((.((((.(.((........)).).))))))))))))....)))))))))... ( -9.24 = -11.56 +   2.32) 

357706.rnaz

RNAalifold consensus structure

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