Index >

Results for CNB 363120-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


363120_ENSG00000104313_HUMAN_8178_8286/1-114        AAAGAGAAAAAGGAGGATACTGCAGCAGTGAAAGGCATATTGTCTTTAAGTT-GAGGTCT
363120_ENSDARG00000014259_ZEBRAFISH_7958_8067/1-114 -AAGGGGAAGA-GAGGAGTCGGTGGAACAGAGAGGCACATTGTCTGTAGGTTCAACCCCT
363120_ENSMUSG00000025932_MOUSE_8201_8311/1-114     AACGAGAAAAGGGAGGATACTGCAGCCAGGAAAGGCATAGTGTCTTTAAGTG-GAGGGCT
363120_ENSRNOG00000007590_RAT_8241_8351/1-114       AAAGAGAAAAGGGAGGATACTGCGGCCAGGAAAGGCATAGTATCTTTAAGTG-GAGGGCT
                                                     * * * **   *****  * *  *    ** ***** * * *** ** **   *   **


363120_ENSG00000104313_HUMAN_8178_8286/1-114        CAACTGTTGTTTCCTCC-TGCAGGTCTATCCTCCT--CCTCCCCTTGTCAGGG-
363120_ENSDARG00000014259_ZEBRAFISH_7958_8067/1-114 CCACCGTTGTTTCCTCCTTCCAGGTCTTCCCTCCT--CCCGGCCCAATGACGGA
363120_ENSMUSG00000025932_MOUSE_8201_8311/1-114     CAACTGTTGTTTCTTCC-TGCAGGTCTATCCTCCTCCCCTCCCCTTGTCAGGA-
363120_ENSRNOG00000007590_RAT_8241_8351/1-114       CAACTGCTGTTTCTTCC-TGCAGGTCTCTCCTCCTCCCCTCCCCTTGTCAAGA-
                                                    * ** * ****** *** * *******  ******  **   **   * * *  

363120-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 114
 Mean pairwise identity:  75.78
 Mean single sequence MFE: -38.95
 Consensus MFE: -19.24
 Energy contribution: -21.80
 Covariance contribution:   2.56
 Mean z-score:  -2.20
 Structure conservation index:   0.49
 SVM decision value:   0.38
 SVM RNA-class probability: 0.711207
 Prediction: RNA

######################################################################

>363120_ENSG00000104313_HUMAN_8178_8286/1-114
AAAGAGAAAAAGGAGGAUACUGCAGCAGUGAAAGGCAUAUUGUCUUUAAGUUGAGGUCUCAACUGUUGUUUCCUCCUGCAGGUCUAUCCUCCUCCUCCCCUUGUCAGGG
...(((....(((((((((((((((.((.(((((((.....)))....((((((....))))))....)))))).))))))...))))))))).)))((((....)))) ( -39.10)
>363120_ENSDARG00000014259_ZEBRAFISH_7958_8067/1-114
AAGGGGAAGAGAGGAGUCGGUGGAACAGAGAGGCACAUUGUCUGUAGGUUCAACCCCUCCACCGUUGUUUCCUCCUUCCAGGUCUUCCCUCCUCCCGGCCCAAUGACGGA
.((((((((.((((((.((((((((((((.((.....)).))))).((.....))..)))))))....)))))))))))(((.....)))))).(((.........))). ( -41.70)
>363120_ENSMUSG00000025932_MOUSE_8201_8311/1-114
AACGAGAAAAGGGAGGAUACUGCAGCCAGGAAAGGCAUAGUGUCUUUAAGUGGAGGGCUCAACUGUUGUUUCUUCCUGCAGGUCUAUCCUCCUCCCCUCCCCUUGUCAGGA
...(((....(((((((((((((((..(((((..(((..(.((((((.....)))))).)...)))..)))))..))))))...)))))))))...))).(((....))). ( -37.90)
>363120_ENSRNOG00000007590_RAT_8241_8351/1-114
AAAGAGAAAAGGGAGGAUACUGCGGCCAGGAAAGGCAUAGUAUCUUUAAGUGGAGGGCUCAACUGCUGUUUCUUCCUGCAGGUCUCUCCUCCUCCCCUCCCCUUGUCAAGA
...((.((..((((((((((((..(((......))).))))))).....(.((((((.....((((...........)))).....)))))).)..))))).)).)).... ( -37.10)
>consensus
AAAGAGAAAAAGGAGGAUACUGCAGCAAGGAAAGGCAUAGUGUCUUUAAGUG_GAGGGCUCAACUGUUGUUUCCUCC_UGCAGGUCUAUCCUCCU__CCUCCCCUUGUCAGGA_
...(((....((((((((.((((((.((((((..(((....((((((......)))))).....)))..)))))).).)))))....))))))))...)))............. (-19.24 = -21.80 +   2.56) 

363120-rev.rnaz

RNAalifold consensus structure

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