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Results for CNB 231571

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

231571_ENSG00000134107_HUMAN_6981_7086/1-109        -AGCGTTGTCCAACACGTGAGACTCATGTGA-TGAAGCCGGGGGAGGG-CGGGCAGGTCG
231571_SINFRUG00000142673_FUGU_2286_2356/1-109      AAGCGCCGTCCAACACGTGAGGCTCATGTGA-CGGCGTCGAGTCTGAGTCTGTCCCGGAG
231571_ENSRNOG00000007152_RAT_9274_9378/1-109       -AGCGTTGTCCAACACGTGAGACTCATGTGA-TGAAGCCGGGGGAGGG-CGGGCAGGTCG
231571_ENSDARG00000004060_ZEBRAFISH_9666_9730/1-109 AAGCGCCGTCACACACGTGAGGCTCATGTGACTGGAGCTCGAGACGTGTCTG-CAGTCAC
                                                     ****  ***  ********* *********  *  *        * * * * *      


231571_ENSG00000134107_HUMAN_6981_7086/1-109        CTCCTTCCCTCCCCGGCAGTGGCCAGACGTGCCTGGAGTCACAGGGTAG
231571_SINFRUG00000142673_FUGU_2286_2356/1-109      AGACGTGCCTGC-------------------------------------
231571_ENSRNOG00000007152_RAT_9274_9378/1-109       CTCCTTCCCTCCCCGGCAGCGGCCAGACGTGCTTGGAGTCACAGGGTA-
231571_ENSDARG00000004060_ZEBRAFISH_9666_9730/1-109 AGGGTT-------------------------------------------
                                                         *                                           


//

231571.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 109
 Mean pairwise identity:  52.13
 Mean single sequence MFE: -36.72
 Consensus MFE: -15.45
 Energy contribution: -16.58
 Covariance contribution:   1.13
 Mean z-score:  -1.26
 Structure conservation index:   0.42
 SVM decision value:   0.44
 SVM RNA-class probability: 0.737380
 Prediction: RNA

######################################################################

>231571_ENSG00000134107_HUMAN_6981_7086/1-109
AGCGUUGUCCAACACGUGAGACUCAUGUGAUGAAGCCGGGGGAGGGCGGGCAGGUCGCUCCUUCCCUCCCCGGCAGUGGCCAGACGUGCCUGGAGUCACAGGGUAG
.(((((..(((.((((((.....)))))).....(((((((.((((.(((.((....))))).)))))))))))..)))...))))).((((......)))).... ( -50.60)
>231571_SINFRUG00000142673_FUGU_2286_2356/1-109
AAGCGCCGUCCAACACGUGAGGCUCAUGUGACGGCGUCGAGUCUGAGUCUGUCCCGGAGAGACGUGCCUGC
..((((((((....(((((.....))))))))))))).........((((.((...)).))))........ ( -23.70)
>231571_ENSRNOG00000007152_RAT_9274_9378/1-109
AGCGUUGUCCAACACGUGAGACUCAUGUGAUGAAGCCGGGGGAGGGCGGGCAGGUCGCUCCUUCCCUCCCCGGCAGCGGCCAGACGUGCUUGGAGUCACAGGGUA
.((((.(.....)))))...((((.((((((.((((((((((((((.(((.((....))))).))))))))(((....)))...)).))))...)))))))))). ( -47.60)
>231571_ENSDARG00000004060_ZEBRAFISH_9666_9730/1-109
AAGCGCCGUCACACACGUGAGGCUCAUGUGACUGGAGCUCGAGACGUGUCUGCAGUCACAGGGUU
..(.(((.((((....))))))).).((((((((.(((.((...)).).)).))))))))..... ( -25.00)
>consensus
_AGCGCCGUCCAACACGUGAGACUCAUGUGA_UGAAGCCGGGGGAGGG_CGGGCAGGUAGAGCCUUCCCUCC_____________________________________
..((.(((.....((((((.....))))))..))).)).(((((((((((((.....)))))))))))))....................................... (-15.45 = -16.58 +   1.13) 

231571.rnaz

RNAalifold consensus structure

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