Index >

Results for CNB 143704-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


143704_ENSG00000165655_HUMAN_9502_9616/1-116    TCTGGCGAGGAAACTCACTTCAAAAGCAGCTGCACCAAGGGGGAGATTAAAGCCTTTGCC
143704_ENSMUSG00000039081_MOUSE_9374_9488/1-116 TCTGGCGAGGAAACTCACTTCAAAAGCAGCTGCACCGAGGGGGAGATTAAAGCCTTTGCC
143704_ENSRNOG00000014237_RAT_9547_9661/1-116   TCTGGCGAGGAAACTCACTTCAAAAGCAGCTGCACGGAGGGGGAGATTAAAGCCTTTGCC
143704_SINFRUG00000138200_FUGU_9523_9635/1-116  -CTGGTAGAAAATTTCACTTCAAAAGCAGCTG-AATTAGTCCGAGATTAAAGCCTTTGCC
                                                 ****     **  ****************** *   **   ******************


143704_ENSG00000165655_HUMAN_9502_9616/1-116    GCCTTCCAATCAAATGGGAGCCCGAGGTGATTGGAGGGTCAAGGGGATGTGACG-C
143704_ENSMUSG00000039081_MOUSE_9374_9488/1-116 GCCTTCCAATCAAATGGGAGCCCGAGGTGATTGGAGGGTCAAGGGGATGTGACG-C
143704_ENSRNOG00000014237_RAT_9547_9661/1-116   GCCTTCCAATCAAATGGGAGCCCGAGGTGATTGGAGGGTCAAGGGGATGTGACG-C
143704_SINFRUG00000138200_FUGU_9523_9635/1-116  GCCTTCCAATCAAATGGGACCCTGAGGTGATTGGAGGGTCAAGGGGATGTGACGT-
                                                ******************* ** *******************************  

143704-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 116
 Mean pairwise identity:  91.20
 Mean single sequence MFE: -39.28
 Consensus MFE: -33.95
 Energy contribution: -33.33
 Covariance contribution:  -0.63
 Mean z-score:  -1.53
 Structure conservation index:   0.86
 SVM decision value:   0.33
 SVM RNA-class probability: 0.689753
 Prediction: RNA

######################################################################

>143704_ENSG00000165655_HUMAN_9502_9616/1-116
UCUGGCGAGGAAACUCACUUCAAAAGCAGCUGCACCAAGGGGGAGAUUAAAGCCUUUGCCGCCUUCCAAUCAAAUGGGAGCCCGAGGUGAUUGGAGGGUCAAGGGGAUGUGACGC
....(((.(....)((((.((....((....)).((..((.((((........)))).))((((((((((((..(((....)))...))))))))))))...)).)).))))))) ( -41.20)
>143704_ENSMUSG00000039081_MOUSE_9374_9488/1-116
UCUGGCGAGGAAACUCACUUCAAAAGCAGCUGCACCGAGGGGGAGAUUAAAGCCUUUGCCGCCUUCCAAUCAAAUGGGAGCCCGAGGUGAUUGGAGGGUCAAGGGGAUGUGACGC
....(((.(....)((((.((....((....)).((..((.((((........)))).))((((((((((((..(((....)))...))))))))))))...)).)).))))))) ( -41.20)
>143704_ENSRNOG00000014237_RAT_9547_9661/1-116
UCUGGCGAGGAAACUCACUUCAAAAGCAGCUGCACGGAGGGGGAGAUUAAAGCCUUUGCCGCCUUCCAAUCAAAUGGGAGCCCGAGGUGAUUGGAGGGUCAAGGGGAUGUGACGC
(((...(((....))).((((....((....))...)))).)))........((((((..((((((((((((..(((....)))...)))))))))))))))))).......... ( -41.40)
>143704_SINFRUG00000138200_FUGU_9523_9635/1-116
CUGGUAGAAAAUUUCACUUCAAAAGCAGCUGAAUUAGUCCGAGAUUAAAGCCUUUGCCGCCUUCCAAUCAAAUGGGACCCUGAGGUGAUUGGAGGGUCAAGGGGAUGUGACGU
.............((((.((.............((((((...))))))..((((((..((((((((((((..(.((...)).)..)))))))))))))))))))).))))... ( -33.30)
>consensus
UCUGGCGAGGAAACUCACUUCAAAAGCAGCUGCACCGAGGGGGAGAUUAAAGCCUUUGCCGCCUUCCAAUCAAAUGGGAGCCCGAGGUGAUUGGAGGGUCAAGGGGAUGUGACG_C
...((.(((....))).))......(((.((.(.(....).).)).......((((((..((((((((((((..(((....)))...))))))))))))))))))..)))...... (-33.95 = -33.33 +  -0.63) 

143704-rev.rnaz

RNAalifold consensus structure

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