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Results for CNB 414393-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


414393_ENSG00000140416_HUMAN_8767_8850/1-85    GTCGGCCTCCGCCTGCTCAGCTCGATCCAAGGCGTTCTCCTTGTCGAGCTTCAGCATCTG
414393_ENSMUSG00000032366_MOUSE_4827_4909/1-85 -TCAGCCTCCGCTTGCTCAGCTCGATCCAAGGCGTTCTCTTTGTCGAGCTTCAGCATCTG
414393_SINFRUG00000144065_FUGU_260_344/1-85    GTCGGCCTCGGCTTGCTCGGCCCGGTCCAGAGCGTTCTCCTTGTCCAACTTCAACATGAG
414393_ENSRNOG00000017441_RAT_3543_3627/1-85   CTCAGCTTCAGCTTGCTCAGCTCGGTCCAGGACATTCTCTTTGTCTAACTTCAGCATCTG
                                                ** ** ** ** ***** ** ** ****   * ***** ***** * ***** ***  *


414393_ENSG00000140416_HUMAN_8767_8850/1-85    CATCTTCTTCTTGATGGCGTCCAT-
414393_ENSMUSG00000032366_MOUSE_4827_4909/1-85 CATCTTCTTCTTGATGGCGTCCAT-
414393_SINFRUG00000144065_FUGU_260_344/1-85    CATCTTTTTCTTGACGGCCTCCATT
414393_ENSRNOG00000017441_RAT_3543_3627/1-85   CATTTTTTTCTTGATGGCCTCCATC
                                               *** ** ******* *** ***** 

414393-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 85
 Mean pairwise identity:  83.50
 Mean single sequence MFE: -22.10
 Consensus MFE: -13.79
 Energy contribution: -14.85
 Covariance contribution:   1.06
 Mean z-score:  -1.93
 Structure conservation index:   0.62
 SVM decision value:   0.26
 SVM RNA-class probability: 0.658446
 Prediction: RNA

######################################################################

>414393_ENSG00000140416_HUMAN_8767_8850/1-85
GUCGGCCUCCGCCUGCUCAGCUCGAUCCAAGGCGUUCUCCUUGUCGAGCUUCAGCAUCUGCAUCUUCUUCUUGAUGGCGUCCAU
...((....((((((((.(((((((..(((((......))))))))))))..)))).....(((........))))))).)).. ( -27.50)
>414393_ENSMUSG00000032366_MOUSE_4827_4909/1-85
UCAGCCUCCGCUUGCUCAGCUCGAUCCAAGGCGUUCUCUUUGUCGAGCUUCAGCAUCUGCAUCUUCUUCUUGAUGGCGUCCAU
...(((...((.((((.(((((((..(((((......))))))))))))..))))...))(((........))))))...... ( -25.50)
>414393_SINFRUG00000144065_FUGU_260_344/1-85
GUCGGCCUCGGCUUGCUCGGCCCGGUCCAGAGCGUUCUCCUUGUCCAACUUCAACAUGAGCAUCUUUUUCUUGACGGCCUCCAUU
...((((((((...((((((......)).))))((((...(((........)))...)))).........)))).))))...... ( -20.60)
>414393_ENSRNOG00000017441_RAT_3543_3627/1-85
CUCAGCUUCAGCUUGCUCAGCUCGGUCCAGGACAUUCUCUUUGUCUAACUUCAGCAUCUGCAUUUUUUUCUUGAUGGCCUCCAUC
...((((..((....)).)))).((.((((((((.......))))).......((....)).............)))))...... ( -14.80)
>consensus
GUCAGCCUCCGCUUGCUCAGCUCGAUCCAAGGCGUUCUCCUUGUCGAACUUCAGCAUCUGCAUCUUCUUCUUGAUGGCCUCCAU_
....(((...((.((((.(((((((..(((((......))))))))))))..))))...))(((........))))))....... (-13.79 = -14.85 +   1.06) 

414393-rev.rnaz

RNAalifold consensus structure

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