Index >

Results for CNB 481656_3-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       CTCGGTTCACATCGGGAGAGCCGGGTTAGAAAGAAGGAGACTCCAGAGAAAATATCTTCA
481656_ENSG00000119866_HUMAN_9496_9947/1-454        CTCGGTTCACATCGGGAGAGCCGGGTTAGAAAGAAGGAGACTCCAGAGAAAATATCTTCA
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     CTCGGTTCACATCGGGAGAGCCGGGTTAGAAAGAAGGAGACTCCAGAGAAAATATCTTCA
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 CTCGGTTCACATCGGGAGAGCCGGGTTAGA---AAGGAGACTCCAGAGAAAATATCTTCA
                                                    ******************************   ***************************


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       TCAGTGCCTTTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCGCAGGGAAGAT
481656_ENSG00000119866_HUMAN_9496_9947/1-454        TCAGTGCCTTTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCGCAGGGAAGAT
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     TCAGTGCCTTTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCGCAGGGAAGAT
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 TCAATGCC-TTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCGCAGGGAAGAT
                                                    *** **** ***************************************************


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       GAATTGTGGGAGAGCCGTCATGGC----------NNNNNNNNNNNNNNAAGAAAAAAAAA
481656_ENSG00000119866_HUMAN_9496_9947/1-454        GAATTGTGGGAGAGCCGTCATGGCTTTTTTTTAAGCNNNNNNNNNNNNNNNNNNNNNNNN
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     GAATTGTGGGAGAGCCGTCATGGC---------------NNNNNNNNNNNNAAGGAAAAA
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 GGATTGTGGGATAGCCGTCATGGC---------------TTTTTTGAAAAGAGAGAGAGA
                                                    * ********* ************                                    


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAAAA
481656_ENSG00000119866_HUMAN_9496_9947/1-454        NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAAAA
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     ------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAAAA
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 ------------------------------------------------GAGATG-AAAAA
                                                                                                        ** *****


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       ATGGCAAAAGCCCCCCTGAGCTGCAAGTTCAAGTGCGGACGTGACGTCCCTGCGAACTTG
481656_ENSG00000119866_HUMAN_9496_9947/1-454        ATGGCAAAAGCCCCCCTGAGCTGCAAGTTCAAGTGCGGACGTGACGTCCCTGCGAACTTG
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     ATGGCAAAAGCCCCCCTGAGCTGCAAGTTCAAGTGCGGACGTGACGTCCCTGCGAACTTG
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 ATGGCAAAAGCCCCCCTGAGCTGCAAGTTCAAGTGCGGACGTGACGTCCCTGCGAACTTG
                                                    ************************************************************

481656_3-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 300
 Mean pairwise identity:  81.92
 Mean single sequence MFE: -62.20
 Consensus MFE: -54.78
 Energy contribution: -57.02
 Covariance contribution:   2.25
 Mean z-score:  -1.28
 Structure conservation index:   0.88
 SVM decision value:  -0.01
 SVM RNA-class probability: 0.528877
 Prediction: RNA

######################################################################

>481656_ENSRNOG00000007049_RAT_9511_9952/1-454
CUCGGUUCACAUCGGGAGAGCCGGGUUAGAAAGAAGGAGACUCCAGAGAAAAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGCNNNNNNNNNNNNNNAAGAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUG
((((((((.(.....).)))))))).......(.((....)).).(((....(((((((.((.((((((((((.....)))))...((((....))))........))))).)))))))))..(((..((.((..(((((((..........................................................................................(((....)))(((((((((.....)))).)).).)).)))))))))))..))).))). ( -60.80)
>481656_ENSG00000119866_HUMAN_9496_9947/1-454
CUCGGUUCACAUCGGGAGAGCCGGGUUAGAAAGAAGGAGACUCCAGAGAAAAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGCUUUUUUUUAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUG
((((((....))))))..(((((((((((((((((.....((((...((...(((((((.((.((((((((((.....)))))...((((....))))........))))).)))))))))..))...)))).(((.....)))))))))))))........................................................................................(((....)))..)))).))).(((((((..(((.(((((...))))).)))))))))) ( -63.40)
>481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454
CUCGGUUCACAUCGGGAGAGCCGGGUUAGAAAGAAGGAGACUCCAGAGAAAAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGCNNNNNNNNNNNNAAGGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUG
((((((((.(.....).)))))))).......(.((....)).).(((....(((((((.((.((((((((((.....)))))...((((....))))........))))).)))))))))..(((..((.((..(((((((...............................................................................(((....)))(((((((((.....)))).)).).)).)))))))))))..))).))). ( -60.80)
>481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454
CUCGGUUCACAUCGGGAGAGCCGGGUUAGAAAGGAGACUCCAGAGAAAAUAUCUUCAUCAAUGCCUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGGAUUGUGGGAUAGCCGUCAUGGCUUUUUUGAAAAGAGAGAGAGAGAGAUGAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUG
..(((((((....(((...(((((((((...((....))(((.((....(((((((.((..((((((((.....))))....((((....))))........))))..)))))))))..)).)))..))))).((((..(((((((.........)))))))..)))).....)))).....)))...)))))))(((((((..(((.(((((...))))).)))))))))) ( -63.80)
>consensus
CUCGGUUCACAUCGGGAGAGCCGGGUUAGAAAGAAGGAGACUCCAGAGAAAAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGC___________________________AAAGAAAAA____________________________________________________UGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUG
((((((((.(.....).)))))))).........((....))...(((....(((((((.((.(((((.((((.....))))....((((....))))........))))).)))))))))..((((((((....(((((((....................................................................................................(((....)))(((((((((.....)))).)).).)).))))))))))).)))).))). (-54.78 = -57.02 +   2.25) 

481656_3-rev.rnaz

RNAalifold consensus structure

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