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Results for CNB 478948-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


478948_ENSMUSG00000026565_MOUSE_4444_4538/1-97     -TGTCCGAGGAAGGCCTGGGCCTGGGCTGTGGAGATCGCTCCTCCAACGGGCACGGGCTG
478948_SINFRUG00000130458_FUGU_7759_7854/1-97      -TGTTGGAGGAGGGCTTGTGCATGTGCATTAGTGATTGCACTTGTGGTTGGCACCATTTG
478948_ENSRNOG00000003581_RAT_3735_3829/1-97       -TGCCCAAGGAAAGCCTGGGCCTGGGCTGTGGAGATGGCCCCTCCGACAGGCACGGGCTG
478948_ENSDARG00000007996_ZEBRAFISH_8031_8126/1-97 CTGTTGGAGCAAGGCCTGTGCGTGTGCGTTGGTGATTGCGCTTGTTGTTTGCACAGTCTG
                                                    **    ** *  ** ** ** ** **  * * *** ** * *       ****    **


478948_ENSMUSG00000026565_MOUSE_4444_4538/1-97     TTTCTGAAAGTCCAGACCATTGGTTTGTGTGCCTGG-
478948_SINFRUG00000130458_FUGU_7759_7854/1-97      CCTCTGGAAATCCAATCCATTTATTTGGATACCTGGG
478948_ENSRNOG00000003581_RAT_3735_3829/1-97       CTTCTCAAAGTCCAGGCCATTGGTCTGTGTGCCTGG-
478948_ENSDARG00000007996_ZEBRAFISH_8031_8126/1-97 CCTCTGAAAGTCCAGTCCATTTGTTTGGGCACCTGG-
                                                     ***  ** ****  *****  * **    ***** 

478948-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 97
 Mean pairwise identity:  70.83
 Mean single sequence MFE: -36.17
 Consensus MFE: -23.59
 Energy contribution: -24.78
 Covariance contribution:   1.19
 Mean z-score:  -1.33
 Structure conservation index:   0.65
 SVM decision value:   0.17
 SVM RNA-class probability: 0.618566
 Prediction: RNA

######################################################################

>478948_ENSMUSG00000026565_MOUSE_4444_4538/1-97
UGUCCGAGGAAGGCCUGGGCCUGGGCUGUGGAGAUCGCUCCUCCAACGGGCACGGGCUGUUUCUGAAAGUCCAGACCAUUGGUUUGUGUGCCUGG
.((((.....((((....))))))))..(((((.......))))).((((((((((((.........)))))(((((...)))))..))))))). ( -38.10)
>478948_SINFRUG00000130458_FUGU_7759_7854/1-97
UGUUGGAGGAGGGCUUGUGCAUGUGCAUUAGUGAUUGCACUUGUGGUUGGCACCAUUUGCCUCUGGAAAUCCAAUCCAUUUAUUUGGAUACCUGGG
..(..((((.(((((..((((.(((((........))))).))))...))).)).....))))..)....((((((((......)))))...))). ( -29.90)
>478948_ENSRNOG00000003581_RAT_3735_3829/1-97
UGCCCAAGGAAAGCCUGGGCCUGGGCUGUGGAGAUGGCCCCUCCGACAGGCACGGGCUGCUUCUCAAAGUCCAGGCCAUUGGUCUGUGUGCCUGG
...(((.((..((((..((((((((((...((((.(((((..((....))...)))))...))))..))))))))))...)).)).....))))) ( -45.60)
>478948_ENSDARG00000007996_ZEBRAFISH_8031_8126/1-97
CUGUUGGAGCAAGGCCUGUGCGUGUGCGUUGGUGAUUGCGCUUGUUGUUUGCACAGUCUGCCUCUGAAAGUCCAGUCCAUUUGUUUGGGCACCUGG
....((((.(((((((((((((...(((..((((....))))...))).)))))))...)))).))....))))(((((......)))))...... ( -31.10)
>consensus
_UGUCCGAGGAAGGCCUGGGCCUGGGCUGUGGAGAUUGCACCUCCGACUGGCACGGGCUGCCUCUGAAAGUCCAGUCCAUUGGUUUGGGUACCUGG_
...(((((((..((((((((((((......((((....)))).....)))))))))))).)))))))..((((((((.....))))))))....... (-23.59 = -24.78 +   1.19) 

478948-rev.rnaz

RNAalifold consensus structure

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