Index >

Results for CNB 501830

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

501830_ENSG00000007968_HUMAN_9395_9461/1-67        CAGCAGCCAACCGGAGCGCGGCATTTTCCGCGGGAGATCCGAATTTCGCGGCACGACGTT
501830_ENSMUSG00000018983_MOUSE_3714_3779/1-67     -AGCAGCCAATCGAGGCGCGGCATTTTCCGCGGGAGATCCGAATTTGGCGGCATATAGTT
501830_ENSDARG00000011314_ZEBRAFISH_5331_5397/1-67 CAGCAGCCAATCGCTGCGCGCCTCTAACCGCGGGAGATCCAAATTTCGCGGGACGTAATT
501830_SINFRUG00000152207_FUGU_3865_3931/1-67      CGGCAGCCAATCAGAGGCCGACTTCAACCGCGGGAGATCTAAATTTCGCGGGACCAAGTT
                                                     ******** *   *  ** *     ************  ***** **** *     **


501830_ENSG00000007968_HUMAN_9395_9461/1-67        TGGCGCT
501830_ENSMUSG00000018983_MOUSE_3714_3779/1-67     TGGCGCT
501830_ENSDARG00000011314_ZEBRAFISH_5331_5397/1-67 TGGCGCT
501830_SINFRUG00000152207_FUGU_3865_3931/1-67      TGGCGCT
                                                   *******


//

501830.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 67
 Mean pairwise identity:  79.35
 Mean single sequence MFE: -24.90
 Consensus MFE: -18.89
 Energy contribution: -19.20
 Covariance contribution:   0.31
 Mean z-score:  -1.49
 Structure conservation index:   0.76
 SVM decision value:   0.07
 SVM RNA-class probability: 0.568800
 Prediction: RNA

######################################################################

>501830_ENSG00000007968_HUMAN_9395_9461/1-67
CAGCAGCCAACCGGAGCGCGGCAUUUUCCGCGGGAGAUCCGAAUUUCGCGGCACGACGUUUGGCGCU
.(((.(((((.((..(.((((......))(((..(........)..))).)).)..)).)))))))) ( -24.70)
>501830_ENSMUSG00000018983_MOUSE_3714_3779/1-67
AGCAGCCAAUCGAGGCGCGGCAUUUUCCGCGGGAGAUCCGAAUUUGGCGGCAUAUAGUUUGGCGCU
(((.(((((((....(((((......)))))((....))))..)))))(.((.......)).)))) ( -21.00)
>501830_ENSDARG00000011314_ZEBRAFISH_5331_5397/1-67
CAGCAGCCAAUCGCUGCGCGCCUCUAACCGCGGGAGAUCCAAAUUUCGCGGGACGUAAUUUGGCGCU
..(((((.....)))))(((((..((.(((((..(........)..)))))....))....))))). ( -29.20)
>501830_SINFRUG00000152207_FUGU_3865_3931/1-67
CGGCAGCCAAUCAGAGGCCGACUUCAACCGCGGGAGAUCUAAAUUUCGCGGGACCAAGUUUGGCGCU
.(((.(((((.(.((((....))))..(((((..(........)..)))))......).)))))))) ( -24.70)
>consensus
CAGCAGCCAAUCGGAGCGCGGCAUUAACCGCGGGAGAUCCAAAUUUCGCGGCACGAAGUUUGGCGCU
.(((.((((((((.....)))......((((((((........))))))))........)))))))) (-18.89 = -19.20 +   0.31) 

501830.rnaz

RNAalifold consensus structure

PS | PDF	PS | PDF