Index >

Results for CNB 79524-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


79524_ENSG00000181982_HUMAN_9896_9999/1-105        GAGTTTGTACTGGTCCCTTTCCTGTTGACAGGTGTCCAGCTCCTTGGAGAGGATCAGCAG
79524_ENSDARG00000020857_ZEBRAFISH_9893_9995/1-105 -AGTTTGAACTGATCCCTTTCCTGCTGGCAAGTGTCCAGTTCTTTCGATAAGATCAGCAG
79524_ENSRNOG00000024454_RAT_9896_9999/1-105       GAGCTTGTACTGGTCCCTCTCCTGCTGGCAGGTGTCCAGCTCCTTGGAGAGGATCAGTAG
79524_SINFRUG00000140484_FUGU_399_501/1-105        -AGTTTGTACTGGTCCCTCTCCTGCTGACACGTGTCCAGCTCCTTCGACAGGATCAGGAG
79524_ENSMUSG00000051719_MOUSE_9895_9998/1-105     -AGCTTGTACTGGTCCCTCTCCTGCTGGCAGGTGTCCAGCTCCTTGGAGAGGATCAGCAG
                                                    ** *** **** ***** ***** ** ** ******** ** ** ** * ****** **


79524_ENSG00000181982_HUMAN_9896_9999/1-105        GGCTTCCTTCTTACTCTCCAGCTTCCTCTTACACACCAGGTACT-
79524_ENSDARG00000020857_ZEBRAFISH_9893_9995/1-105 TGCCTCCTTCTTACTCTCCAGCTTTCTTTTGCACACCAGGAACT-
79524_ENSRNOG00000024454_RAT_9896_9999/1-105       AGCCTCCTTCTTGCTCTCCAGCTTCCGTTTACACACCAGGTACT-
79524_SINFRUG00000140484_FUGU_399_501/1-105        GGCTTCTTTCTTACTCTCCAGCTTCTGCTTACAAACCATGAACT-
79524_ENSMUSG00000051719_MOUSE_9895_9998/1-105     AGCCTCCTTCTTGCTCTCCAGCTTCCGTTTACACACCAGGTACTA
                                                    ** ** ***** ***********    ** ** **** * *** 

79524-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 105
 Mean pairwise identity:  86.46
 Mean single sequence MFE: -29.22
 Consensus MFE: -21.28
 Energy contribution: -21.28
 Covariance contribution:  -0.00
 Mean z-score:  -1.63
 Structure conservation index:   0.73
 SVM decision value:   0.06
 SVM RNA-class probability: 0.564338
 Prediction: RNA

######################################################################

>79524_ENSG00000181982_HUMAN_9896_9999/1-105
GAGUUUGUACUGGUCCCUUUCCUGUUGACAGGUGUCCAGCUCCUUGGAGAGGAUCAGCAGGGCUUCCUUCUUACUCUCCAGCUUCCUCUUACACACCAGGUACU
......((((((((.......(((....)))((((..((....((((((((....((.(((....))).))..))))))))....))...)))))))).)))). ( -28.20)
>79524_ENSDARG00000020857_ZEBRAFISH_9893_9995/1-105
AGUUUGAACUGAUCCCUUUCCUGCUGGCAAGUGUCCAGUUCUUUCGAUAAGAUCAGCAGUGCCUCCUUCUUACUCUCCAGCUUUCUUUUGCACACCAGGAACU
.................((((((..((((..(((.....((((.....))))...))).))))................((........))....)))))).. ( -17.70)
>79524_ENSRNOG00000024454_RAT_9896_9999/1-105
GAGCUUGUACUGGUCCCUCUCCUGCUGGCAGGUGUCCAGCUCCUUGGAGAGGAUCAGUAGAGCCUCCUUCUUGCUCUCCAGCUUCCGUUUACACACCAGGUACU
..((((((((((((((.(((((.((((((....).))))).....))))))))))))))((((.........))))....................)))))... ( -37.20)
>79524_SINFRUG00000140484_FUGU_399_501/1-105
AGUUUGUACUGGUCCCUCUCCUGCUGACACGUGUCCAGCUCCUUCGACAGGAUCAGGAGGGCUUCUUUCUUACUCUCCAGCUUCUGCUUACAAACCAUGAACU
.(((((((.((((((.((....((((((....)).))))......))..))))))((((((...........))))))(((....))))))))))........ ( -27.70)
>79524_ENSMUSG00000051719_MOUSE_9895_9998/1-105
AGCUUGUACUGGUCCCUCUCCUGCUGGCAGGUGUCCAGCUCCUUGGAGAGGAUCAGCAGAGCCUCCUUCUUGCUCUCCAGCUUCCGUUUACACACCAGGUACUA
.....((((((((.(((((((.((((((....).))))).....)))))))...((((((((.........)))))...)))...........)))).)))).. ( -35.30)
>consensus
_AGUUUGUACUGGUCCCUCUCCUGCUGGCAGGUGUCCAGCUCCUUGGAGAGGAUCAGCAGAGCCUCCUUCUUACUCUCCAGCUUCCGUUUACACACCAGGUACU_
..((((...(((((((.(((((.((((((....)).)))).....))))))))))))..)))).......................................... (-21.28 = -21.28 +  -0.00) 

79524-rev.rnaz

RNAalifold consensus structure

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