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Results for CNB 393758-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


393758_ENSMUSG00000025993_MOUSE_9754_9818/1-65     CTTCTTTTTGTCTTCTTTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGCCAAAG
393758_SINFRUG00000122977_FUGU_3358_3422/1-65      CTCCCGTTTTCCTCCCCTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGAAATGC
393758_ENSRNOG00000003872_RAT_9703_9767/1-65       CTTCTTTATGTCTTCTTTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGCTAAAG
393758_ENSDARG00000000241_ZEBRAFISH_9812_9874/1-65 -TCTCCCTTCTCTCCTCTCCAAACTTAGCTATCACTGTAGCTGAAGTCGGAGAGAAATAA
                                                    *      *  ** *  ************** *************** *** **  *   


393758_ENSMUSG00000025993_MOUSE_9754_9818/1-65     CCTTA
393758_SINFRUG00000122977_FUGU_3358_3422/1-65      TTTTA
393758_ENSRNOG00000003872_RAT_9703_9767/1-65       CCTTA
393758_ENSDARG00000000241_ZEBRAFISH_9812_9874/1-65 CCTT-
                                                     ** 

393758-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 65
 Mean pairwise identity:  78.72
 Mean single sequence MFE: -17.13
 Consensus MFE: -16.77
 Energy contribution: -17.27
 Covariance contribution:   0.50
 Mean z-score:  -3.84
 Structure conservation index:   0.98
 SVM decision value:   3.78
 SVM RNA-class probability: 0.999612
 Prediction: RNA

######################################################################

>393758_ENSMUSG00000025993_MOUSE_9754_9818/1-65
CUUCUUUUUGUCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGCCAAAGCCUUA
.....(((((....((((((((..(((((((......)))))))..)))))))).)))))..... ( -18.70)
>393758_SINFRUG00000122977_FUGU_3358_3422/1-65
CUCCCGUUUUCCUCCCCUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGAAAUGCUUUUA
.................(((((..(((((((......)))))))..))))).............. ( -13.80)
>393758_ENSRNOG00000003872_RAT_9703_9767/1-65
CUUCUUUAUGUCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGCUAAAGCCUUA
..............((((((((..(((((((......)))))))..))))))))........... ( -17.80)
>393758_ENSDARG00000000241_ZEBRAFISH_9812_9874/1-65
UCUCCCUUCUCUCCUCUCCAAACUUAGCUAUCACUGUAGCUGAAGUCGGAGAGAAAUAACCUU
.............((((((.(..((((((((....))))))))..).)))))).......... ( -18.20)
>consensus
CUCCCUUUUGUCUCCUCUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGAAAAAGCCUUA
..............((((((((..(((((((......)))))))..))))))))........... (-16.77 = -17.27 +   0.50) 

393758-rev.rnaz

RNAalifold consensus structure

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