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Results for CNB 357813

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

357813_ENSMUSG00000026506_MOUSE_9882_9961/1-80     AAGATGGAGGCGCTTTCCTACTGATTATGCTTCCACCTCAGAAGATGAATTTGGATCAAA
357813_ENSDARG00000022673_ZEBRAFISH_9819_9898/1-80 AAGGTGGCGCCGGGTGCCGATTGAATATGCTTCTACCTCAGAAGATGAGTATGGCTCCAA
357813_SINFRUG00000146612_FUGU_8420_8497/1-80      -AGGTGGCGACGTCTTCCTCCAGAGTACGGCTCCACCTCCGAGGAAGAGTTTGGCTCCAG
357813_ENSRNOG00000004010_RAT_5150_5228/1-80       -AGATGGAGGCGCTTTCCTACTGATTATGCTTCCACCTCAGAAGATGAATTTGGATCAAA
                                                    ** *** * **  * **    ** ** *  ** ***** ** ** ** * *** ** * 


357813_ENSMUSG00000026506_MOUSE_9882_9961/1-80     CCGTAATTCCCCTAAACATA
357813_ENSDARG00000022673_ZEBRAFISH_9819_9898/1-80 TCGACACCCCTCTCACCACA
357813_SINFRUG00000146612_FUGU_8420_8497/1-80      CCGGAACTCTCCCAAGCAT-
357813_ENSRNOG00000004010_RAT_5150_5228/1-80       CCGTAATTCCCCTAAACATA
                                                    **  *  *  *  * **  


//

357813.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 80
 Mean pairwise identity:  73.49
 Mean single sequence MFE: -22.48
 Consensus MFE: -13.23
 Energy contribution: -13.85
 Covariance contribution:   0.62
 Mean z-score:  -1.84
 Structure conservation index:   0.59
 SVM decision value:   0.78
 SVM RNA-class probability: 0.848920
 Prediction: RNA

######################################################################

>357813_ENSMUSG00000026506_MOUSE_9882_9961/1-80
AAGAUGGAGGCGCUUUCCUACUGAUUAUGCUUCCACCUCAGAAGAUGAAUUUGGAUCAAACCGUAAUUCCCCUAAACAUA
.((.((((((((...((.....))...)))))))).))....((..((((((((......))).)))))..))....... ( -15.80)
>357813_ENSDARG00000022673_ZEBRAFISH_9819_9898/1-80
AAGGUGGCGCCGGGUGCCGAUUGAAUAUGCUUCUACCUCAGAAGAUGAGUAUGGCUCCAAUCGACACCCCUCUCACCACA
..(((((.(..(((((.((((((......(((((.....)))))..(((.....))))))))).)))))..))))))... ( -29.50)
>357813_SINFRUG00000146612_FUGU_8420_8497/1-80
AGGUGGCGACGUCUUCCUCCAGAGUACGGCUCCACCUCCGAGGAAGAGUUUGGCUCCAGCCGGAACUCUCCCAAGCAU
((((((.(.((((((......))).))).).))))))....((.((((((((((....))).))))))).))...... ( -29.10)
>357813_ENSRNOG00000004010_RAT_5150_5228/1-80
AGAUGGAGGCGCUUUCCUACUGAUUAUGCUUCCACCUCAGAAGAUGAAUUUGGAUCAAACCGUAAUUCCCCUAAACAUA
((.((((((((...((.....))...)))))))).))....((..((((((((......))).)))))..))....... ( -15.50)
>consensus
_AGAUGGAGGCGCUUUCCUACUGAUUAUGCUUCCACCUCAGAAGAUGAAUUUGGAUCAAACCGUAACUCCCCUAAACAUA
.(((((((((((...((.....))...)))))))))))....((..((((((((......))).)))))..))....... (-13.23 = -13.85 +   0.62) 

357813.rnaz

RNAalifold consensus structure

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