Index >

Results for CNB 489526-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


489526_ENSMUSG00000042744_MOUSE_3011_3232/1-224     -ACTCACCTAGTTTGATGTGGACTTTGTCTGTGGAAAGAACCACAGAAGGGTACTGGTCA
489526_ENSDARG00000003682_ZEBRAFISH_7956_8073/1-224 T-----------------------------------------------------------
489526_ENSRNOG00000001352_RAT_1589_1811/1-224       -ACTCACCTAGTTTTATGTGGACTTTGTCTGTGGAGAGAACCACAGAAGGGTACTGGTCA
489526_SINFRUG00000133157_FUGU_749_866/1-224        G-----------------------------------------------------------
                                                                                                                


489526_ENSMUSG00000042744_MOUSE_3011_3232/1-224     GCTGTGGGTGGAGGGGCGAGCCCAGTGTTGGCTGGGGAGGCGTCTCGAGGGTAGCAGGCA
489526_ENSDARG00000003682_ZEBRAFISH_7956_8073/1-224 ----------------------------------------------GAGCACAG-AGGTG
489526_ENSRNOG00000001352_RAT_1589_1811/1-224       GCTGTAGGTGGAGGGGCGAGCCCAGTGTTGGCTGGGGAGGCGTCTCGAGGGTAGCAGGCG
489526_SINFRUG00000133157_FUGU_749_866/1-224        ----------------------------------------------CAGGACAG-ACGGA
                                                                                                   **   ** * *  


489526_ENSMUSG00000042744_MOUSE_3011_3232/1-224     GCCTCAATGAGGTTCAGCTGGCCGGTACGCTTCACTTTGTGGCCAAGCCCATAGACGAGC
489526_ENSDARG00000003682_ZEBRAFISH_7956_8073/1-224 GGCACCGTGTCCAGCTCATCCTCAGAGCGCTCAACGGTCTCTCCTACACTGTAGGTTAGC
489526_ENSRNOG00000001352_RAT_1589_1811/1-224       GCTTCAATGAGGTTCAGCTGGCCAGTGCGCTTCACTTTGTGGCCGAGCCCATAGACGAGC
489526_SINFRUG00000133157_FUGU_749_866/1-224        GGCACCGTGTCCGGCTCGTCTTCGGAGCGCTCGCTGCTCTCGTCAAGCTTCCACGTTAGC
                                                    *   *  **     *   *   * *  ****      * *   * *      *    ***


489526_ENSMUSG00000042744_MOUSE_3011_3232/1-224     ACGCGTGCCCACGGAGCCTTGTACAAAGAGGAGCTGAGAGGAA-
489526_ENSDARG00000003682_ZEBRAFISH_7956_8073/1-224 AGCTGTTCAGCGAAGGCCATCGCCAATGGAAACTCAAGAGGCAA
489526_ENSRNOG00000001352_RAT_1589_1811/1-224       ACACGTGCCCACGGAGCCTTGTACAGAGAGGAGCTGAGAGGAAG
489526_SINFRUG00000133157_FUGU_749_866/1-224        AACTGTTCGGCAAAAGCAATGGCCAAAGGGAACTCCAGCGGCAG
                                                    *   ** *       **  *   **  *   *    ** ** * 

489526-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 224
 Mean pairwise identity:  41.39
 Mean single sequence MFE: -66.55
 Consensus MFE: -11.94
 Energy contribution: -15.38
 Covariance contribution:   3.44
 Mean z-score:  -1.22
 Structure conservation index:   0.18
 SVM decision value:  -0.05
 SVM RNA-class probability: 0.510424
 Prediction: RNA

######################################################################

>489526_ENSMUSG00000042744_MOUSE_3011_3232/1-224
ACUCACCUAGUUUGAUGUGGACUUUGUCUGUGGAAAGAACCACAGAAGGGUACUGGUCAGCUGUGGGUGGAGGGGCGAGCCCAGUGUUGGCUGGGGAGGCGUCUCGAGGGUAGCAGGCAGCCUCAAUGAGGUUCAGCUGGCCGGUACGCUUCACUUUGUGGCCAAGCCCAUAGACGAGCACGCGUGCCCACGGAGCCUUGUACAAAGAGGAGCUGAGAGGAA
.(((............((((...((((((((((......(((((((((.((((((((((((((......((((.((...((((((....))))))...)).))))((((.(.(....)).)))).........)))))))))))))).))))....)))))......))))))))))(((....)))))))((..((((.......))))..))..)))... ( -93.70)
>489526_ENSDARG00000003682_ZEBRAFISH_7956_8073/1-224
UGAGCACAGAGGUGGGCACCGUGUCCAGCUCAUCCUCAGAGCGCUCAACGGUCUCUCCUACACUGUAGGUUAGCAGCUGUUCAGCGAAGGCCAUCGCCAAUGGAAACUCAAGAGGCAA
...((...(((.(((((.....))))).)))...(((.(((((((.((((((((..(((((...)))))..))..)))))).))))..(((....)))........)))..))))).. ( -41.60)
>489526_ENSRNOG00000001352_RAT_1589_1811/1-224
ACUCACCUAGUUUUAUGUGGACUUUGUCUGUGGAGAGAACCACAGAAGGGUACUGGUCAGCUGUAGGUGGAGGGGCGAGCCCAGUGUUGGCUGGGGAGGCGUCUCGAGGGUAGCAGGCGGCUUCAAUGAGGUUCAGCUGGCCAGUGCGCUUCACUUUGUGGCCGAGCCCAUAGACGAGCACACGUGCCCACGGAGCCUUGUACAGAGAGGAGCUGAGAGGAAG
.(((.........((((((..(((.((((((((.(....(((((((((.((((((((((((((......((((.((...((((((....))))))...)).))))((((...(....)..)))).........)))))))))))))).))))....))))).....))))))))))))..))))))....(((..((((.......))))..))).))).... ( -92.50)
>489526_SINFRUG00000133157_FUGU_749_866/1-224
GCAGGACAGACGGAGGCACCGUGUCCGGCUCGUCUUCGGAGCGCUCGCUGCUCUCGUCAAGCUUCCACGUUAGCAACUGUUCGGCAAAAGCAAUGGCCAAAGGGAACUCCAGCGGCAG
((.(((((((((..((((.((.((...((((.......)))))).)).))))..))))..(((........)))...))))).))..........(((....((....))...))).. ( -38.40)
>consensus
__________________________________________________________________________________________________________GAGGACAG_AGGCAGCCACAAUGACCUGCACCUCGCCAGAGCGCUCCACGUUCUCGCCAAGCCCAUAGACGAGCACCCGUGCCCACAAAGCCAUGGACAAAGAGAACCCGAGAGGAAG
...........................(((((((......))))))).........................((((((..(((((......)))))....))))))............((((................(((((((((((.....)))))))))))........................((((......)))).........))))........ (-11.94 = -15.38 +   3.44) 

489526-rev.rnaz

RNAalifold consensus structure

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