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Results for CNB 393756

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

393756_ENSG00000138449_HUMAN_8846_8910/1-66        TTCCATAAGGCTTTGCCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAAAGAAGG
393756_ENSMUSG00000025993_MOUSE_9749_9813/1-66     TCCCATAAGGCTTTGGCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAAAGAAGA
393756_ENSDARG00000000241_ZEBRAFISH_9806_9871/1-66 TCTAGAAAGGTTATTTCTCTCCGACTTCAGCTACAGTGATAGCTAAGTTTGGAGAGGAGA
393756_SINFRUG00000122977_FUGU_3355_3417/1-66      -CTATAAAAGC-ATTTCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAGGGGAGG
393756_ENSRNOG00000003872_RAT_9698_9762/1-66       TTCCATAAGGCTTTAGCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAAAGAAGA
                                                         ** *   *  ** *** *************** **************  * ** 


393756_ENSG00000138449_HUMAN_8846_8910/1-66        AAAAA-
393756_ENSMUSG00000025993_MOUSE_9749_9813/1-66     CAAAA-
393756_ENSDARG00000000241_ZEBRAFISH_9806_9871/1-66 GAAGGG
393756_SINFRUG00000122977_FUGU_3355_3417/1-66      AAAAC-
393756_ENSRNOG00000003872_RAT_9698_9762/1-66       CATAA-
                                                    *    


//

393756.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 66
 Mean pairwise identity:  80.12
 Mean single sequence MFE: -19.00
 Consensus MFE: -17.60
 Energy contribution: -16.88
 Covariance contribution:  -0.72
 Mean z-score:  -3.07
 Structure conservation index:   0.93
 SVM decision value:   3.02
 SVM RNA-class probability: 0.998167
 Prediction: RNA

######################################################################

>393756_ENSG00000138449_HUMAN_8846_8910/1-66
UUCCAUAAGGCUUUGCCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGGAAAAA
((((....(((...)))((((((((((.(((((......)))))))).)))))))...))))... ( -20.10)
>393756_ENSMUSG00000025993_MOUSE_9749_9813/1-66
UCCCAUAAGGCUUUGGCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGACAAAA
...........((((.(((((((((((.(((((......)))))))).))))))))....)))). ( -18.40)
>393756_ENSDARG00000000241_ZEBRAFISH_9806_9871/1-66
UCUAGAAAGGUUAUUUCUCUCCGACUUCAGCUACAGUGAUAGCUAAGUUUGGAGAGGAGAGAAGGG
.............((((((((((((((.(((((......)))))))).)))))))))))....... ( -21.50)
>393756_SINFRUG00000122977_FUGU_3355_3417/1-66
CUAUAAAAGCAUUUCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAGGGGAGGAAAAC
...........((((((((((((((.(((((......)))))))).)))))))))))...... ( -18.50)
>393756_ENSRNOG00000003872_RAT_9698_9762/1-66
UUCCAUAAGGCUUUAGCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGACAUAA
................(((((((((((.(((((......)))))))).))))))))......... ( -16.50)
>consensus
UCCCAUAAGGCUUUGGCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGAAAAAA_
................(((((((((((.(((((......)))))))).)))))))).......... (-17.60 = -16.88 +  -0.72) 

393756.rnaz

RNAalifold consensus structure

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