Index >

Results for CNB 453971

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

453971_ENSMUSG00000007817_MOUSE_796_1001/1-207      -AGGTGTGTTCCTCTTTCCAGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAAC
453971_SINFRUG00000145892_FUGU_8334_8523/1-207      -AGATGAGCTCCTCTTTTCAGATGGCACCAAACCAGGCATACAACAGCCAGTTCATGAAC
453971_ENSDARG00000013677_ZEBRAFISH_9793_9998/1-207 CAGGTTTGCTCCTCATTCCAGATGGGGCCTACGCAAGGCTACAACAGCCAGTTTATGAAC
453971_ENSRNOG00000010488_RAT_796_1001/1-207        -AGGTGTGTTCCTCTTTCCAGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAAC
                                                     ** *  * ***** ** *******  ** *  ** *  ** ******** ** ******


453971_ENSMUSG00000007817_MOUSE_796_1001/1-207      CAACCCGGGCCTCGGGGGCCTGCCTCCATGGGGGGCAGCCTGAACCCTGCCGGCATGGCA
453971_SINFRUG00000145892_FUGU_8334_8523/1-207      CAGCCAGGGCCTCGCGGCCCCGCATC--------GCTCCCTGGAAAC-------ATGGGC
453971_ENSDARG00000013677_ZEBRAFISH_9793_9998/1-207 CAGCCAGGGCCTCGCGGACCCCCATCCATGGCAGGAGGCATGAACCCAGCTGCTATGGGT
453971_ENSRNOG00000010488_RAT_796_1001/1-207        CAACCCGGGCCTCGGGGGCCTGCCTCCATGGGGGGCAGCATGAACCCTGCCAGCATGGCA
                                                    ** ** ******** ** **  * **        *   * ** *  *       ****  


453971_ENSMUSG00000007817_MOUSE_796_1001/1-207      GCTGGCATGACACCCTCGGGCATGAGCGGCCCTCCCATGGGCATGAACCAGCCCCGACCA
453971_SINFRUG00000145892_FUGU_8334_8523/1-207      GCAGGCATGAATGCGTCCAACATGAGTGGGCCTCCCATGGGAATGAACCAGCCCAGGGGC
453971_ENSDARG00000013677_ZEBRAFISH_9793_9998/1-207 GGTGGAATGAATAGCTCCAACATGAGCGGCCCACCGATGGGTATGAACCAGCCCAGAGGC
453971_ENSRNOG00000010488_RAT_796_1001/1-207        GCTGGCATGACACCCTCGGGCATGAGCGGCCCTCCCATGGGCATGAACCAGCCCCGACCG
                                                    *  ** ****     **   ****** ** ** ** ***** ************ *    


453971_ENSMUSG00000007817_MOUSE_796_1001/1-207      CCCGGCATCAGCCCCTTTGGCACACAC
453971_SINFRUG00000145892_FUGU_8334_8523/1-207      CAAGGCATGGGGCCTTTTGGTGCCCA-
453971_ENSDARG00000013677_ZEBRAFISH_9793_9998/1-207 CCAGGCATGGGGCCCTTTGGTGGCCA-
453971_ENSRNOG00000010488_RAT_796_1001/1-207        CCTGGCATCAGCCCCTTTGGCACACAC
                                                    *  *****  * ** *****    ** 


//

453971.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 207
 Mean pairwise identity:  75.61
 Mean single sequence MFE: -86.78
 Consensus MFE: -44.72
 Energy contribution: -51.73
 Covariance contribution:   7.00
 Mean z-score:  -2.57
 Structure conservation index:   0.52
 SVM decision value:   1.64
 SVM RNA-class probability: 0.969446
 Prediction: RNA

######################################################################

>453971_ENSMUSG00000007817_MOUSE_796_1001/1-207
AGGUGUGUUCCUCUUUCCAGAUGGGUCCCACCCAGGCGUAUAACAGCCAAUUCAUGAACCAACCCGGGCCUCGGGGGCCUGCCUCCAUGGGGGGCAGCCUGAACCCUGCCGGCAUGGCAGCUGGCAUGACACCCUCGGGCAUGAGCGGCCCUCCCAUGGGCAUGAACCAGCCCCGACCACCCGGCAUCAGCCCCUUUGGCACACAC
..((((((........((...((((.....))))(((........))).................))(((..((((((.((((....((((((((.((((((..(.(((((((......))))))).)......)))))).......((((......))))........)))))..)))...))))...))))))..))))))))) ( -85.30)
>453971_SINFRUG00000145892_FUGU_8334_8523/1-207
AGAUGAGCUCCUCUUUUCAGAUGGCACCAAACCAGGCAUACAACAGCCAGUUCAUGAACCAGCCAGGGCCUCGCGGCCCCGCAUCGCUCCCUGGAAACAUGGGCGCAGGCAUGAAUGCGUCCAACAUGAGUGGGCCUCCCAUGGGAAUGAACCAGCCCAGGGGCCAAGGCAUGGGGCCUUUUGGUGCCCA
.((.(((...)))...))....(((((((((..((((...((...(((.((((((...(((....(((((..(((....)))..(((((..((....))((((((((........))))))))....))))))))))....)))..))))))..(((....)))...))).))..))))))))))))).. ( -79.70)
>453971_ENSDARG00000013677_ZEBRAFISH_9793_9998/1-207
CAGGUUUGCUCCUCAUUCCAGAUGGGGCCUACGCAAGGCUACAACAGCCAGUUUAUGAACCAGCCAGGGCCUCGCGGACCCCCAUCCAUGGCAGGAGGCAUGAACCCAGCUGCUAUGGGUGGUGGAAUGAAUAGCUCCAACAUGAGCGGCCCACCGAUGGGUAUGAACCAGCCCAGAGGCCCAGGCAUGGGGCCCUUUGGUGGCCA
..((((...........((((..((((((.......((((.....))))..........((((((.(((((((.(((.((.(((((((((((((..((.......))..))))))))))))).))........((((......))))......))).(((((........)))))))))))).))).))))))))))))).)))). ( -91.90)
>453971_ENSRNOG00000010488_RAT_796_1001/1-207
AGGUGUGUUCCUCUUUCCAGAUGGGUCCCACCCAGGCGUAUAACAGCCAAUUCAUGAACCAACCCGGGCCUCGGGGGCCUGCCUCCAUGGGGGGCAGCAUGAACCCUGCCAGCAUGGCAGCUGGCAUGACACCCUCGGGCAUGAGCGGCCCUCCCAUGGGCAUGAACCAGCCCCGACCGCCUGGCAUCAGCCCCUUUGGCACACAC
..(((((.........(((((.((((.....(((((((.......((...((((((........((((((.....))))))..((((((((((((..((((..((((((((((......))))))).((.....)))))))))....)))).))))))))))))))...))......))))))).....)))).)))))))))).. ( -90.22)
>consensus
_AGGUGUGCUCCUCUUUCCAGAUGGGUCCCACCCAGGCGUACAACAGCCAAUUCAUGAACCAACCAGGGCCUCGCGGGCCCGCAUCCAUGGGGGGCAGCAUGAACCCUGCCGGCAUGGCAGCUGGCAUGAAACCCUCCAACAUGAGCGGCCCUCCCAUGGGCAUGAACCAGCCCAGACCCCCAGGCAUCAGCCCCUUUGGCACACA_
.................(((((.((((((......(((........))).............(((.((((((((((((((.((.((((((...(((((........)))))..)))))).))...((((...........))))...)))))))....((((........)))).))))))).)))..)))))).)))))....... (-44.72 = -51.73 +   7.00) 

453971.rnaz

RNAalifold consensus structure

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