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Results for CNB 118425-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


118425_ENSG00000161813_HUMAN_8784_8839/1-57        AATTTCTTGCCATACTTTGGCATTAGGATTTAAACCAGTTCCTTTAGATGCTACCT-
118425_ENSRNOG00000013146_RAT_4862_4917/1-57       AATTTCTTGCCATACTTTGGCATTAGGATTTAAACCAGTGCCTTTAGATGTCACGT-
118425_ENSDARG00000018082_ZEBRAFISH_8472_8527/1-57 -ACTTCCTGCCACACTTTAGCATTGGGATTCAGACCAGCCCCCTTGGTGGTCACCTT
118425_SINFRUG00000145244_FUGU_2793_2847/1-57      -ATCTCCTGCCACACCTTGGCATTGGGGTTCAAACCGGCACCCTTGGAGGTGACCT-
118425_ENSMUSG00000046236_MOUSE_9818_9873/1-57     AATTTCTTGCCATACTTTGGCATTAGGATTTAAACCAGTGCCTTTAGATGTCACCT-
                                                    *  ** ***** ** ** ***** ** ** * *** *  ** ** *  *  ** * 

118425-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 57
 Mean pairwise identity:  79.75
 Mean single sequence MFE: -13.26
 Consensus MFE:  -7.86
 Energy contribution:  -7.26
 Covariance contribution:  -0.60
 Mean z-score:  -1.89
 Structure conservation index:   0.59
 SVM decision value:   0.37
 SVM RNA-class probability: 0.708401
 Prediction: RNA

######################################################################

>118425_ENSG00000161813_HUMAN_8784_8839/1-57
AAUUUCUUGCCAUACUUUGGCAUUAGGAUUUAAACCAGUUCCUUUAGAUGCUACCU
.......(((((.....))))).(((.(((((((........))))))).)))... ( -12.00)
>118425_ENSRNOG00000013146_RAT_4862_4917/1-57
AAUUUCUUGCCAUACUUUGGCAUUAGGAUUUAAACCAGUGCCUUUAGAUGUCACGU
.......((.(((.((..((((((.((.......))))))))...))))).))... ( -11.80)
>118425_ENSDARG00000018082_ZEBRAFISH_8472_8527/1-57
ACUUCCUGCCACACUUUAGCAUUGGGAUUCAGACCAGCCCCCUUGGUGGUCACCUU
..(((((((.........)))..))))....(((((.((.....)))))))..... ( -11.90)
>118425_SINFRUG00000145244_FUGU_2793_2847/1-57
AUCUCCUGCCACACCUUGGCAUUGGGGUUCAAACCGGCACCCUUGGAGGUGACCU
(((((((((((.....)))))..(((((((.....)).))))).))))))..... ( -18.80)
>118425_ENSMUSG00000046236_MOUSE_9818_9873/1-57
AAUUUCUUGCCAUACUUUGGCAUUAGGAUUUAAACCAGUGCCUUUAGAUGUCACCU
.......((.(((.((..((((((.((.......))))))))...))))).))... ( -11.80)
>consensus
AAUUUCUUGCCAUACUUUGGCAUUAGGAUUUAAACCAGUGCCUUUAGAUGUCACCU_
...(((((((((.....)))))..))))............................. ( -7.86 =  -7.26 +  -0.60) 

118425-rev.rnaz

RNAalifold consensus structure

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