Index >

Results for CNB 386640

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

386640_ENSG00000158066_HUMAN_936_989/1-54     AGGCCAAGGTGCAACTTCCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCA
386640_ENSMUSG00000038900_MOUSE_937_988/1-54  -GGCAACGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACC-
386640_ENSRNOG00000016220_RAT_9890_9943/1-54  AGGCAACGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCA
386640_SINFRUG00000134705_FUGU_6362_6413/1-54 -GGTGAAGGTGCAACAGTAATCGGTCGTCCCGACTGCGGGTTCATCCGACACC-
                                               **  * ********     ************* * ***************** 


//

386640.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 54
 Mean pairwise identity:  87.27
 Mean single sequence MFE: -16.72
 Consensus MFE: -15.15
 Energy contribution: -15.15
 Covariance contribution:   0.00
 Mean z-score:  -1.35
 Structure conservation index:   0.91
 SVM decision value:   0.11
 SVM RNA-class probability: 0.588393
 Prediction: RNA

######################################################################

>386640_ENSG00000158066_HUMAN_936_989/1-54
AGGCCAAGGUGCAACUUCCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACCA
.......((((.........((((..(.((((....))))..)..)))))))). ( -16.00)
>386640_ENSMUSG00000038900_MOUSE_937_988/1-54
GGCAACGGUGCAACUUUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACC
(....)((((.........((((..(.((((....))))..)..)))))))) ( -15.40)
>386640_ENSRNOG00000016220_RAT_9890_9943/1-54
AGGCAACGGUGCAACUUUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACCA
.(....)((((.........((((..(.((((....))))..)..)))))))). ( -17.30)
>386640_SINFRUG00000134705_FUGU_6362_6413/1-54
GGUGAAGGUGCAACAGUAAUCGGUCGUCCCGACUGCGGGUUCAUCCGACACC
((((..((((.(((.(((.((((.....)))).)))..))))).))..)))) ( -18.20)
>consensus
_GGCAAAGGUGCAACUUUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACC_
.......((((.........((((..(.((((....))))..)..)))))))). (-15.15 = -15.15 +   0.00) 

386640.rnaz

RNAalifold consensus structure

PS | PDF	PS | PDF