Index >

Results for CNB 363129-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


363129_ENSG00000104313_HUMAN_8175_8288/1-119        CAAAAGAGAAAAAGGAGGATACTGCAGCAGTGAAAGGCATATTGTCTTTAAGTT-GAGGT
363129_ENSDARG00000014259_ZEBRAFISH_7973_8070/1-119 CAGAAGGGGAAGA-GAGGAGTCGGTGGAACAGAGAGGCACATTGTCTGTAGGTTCAACCC
363129_ENSMUSG00000025932_MOUSE_8198_8313/1-119     CAAACGAGAAAAGGGAGGATACTGCAGCCAGGAAAGGCATAGTGTCTTTAAGTG-GAGGG
363129_ENSRNOG00000007590_RAT_8238_8352/1-119       -AAAAGAGAAAAGGGAGGATACTGCGGCCAGGAAAGGCATAGTATCTTTAAGTG-GAGGG
                                                     * * * * **   *****  * *  *    ** ***** * * *** ** **   *   


363129_ENSG00000104313_HUMAN_8175_8288/1-119        CTCAACTGTTGTTTCCTCC-TGCAGGTCTATCCTCCT--CCTCCCCTTGTCAGGGGG-G
363129_ENSDARG00000014259_ZEBRAFISH_7973_8070/1-119 CTCCACCGTTGTTTCCTCCTTCCAGGTCT-TC--CCT--CCTCC---------------
363129_ENSMUSG00000025932_MOUSE_8198_8313/1-119     CTCAACTGTTGTTTCTTCC-TGCAGGTCTATCCTCCTCCCCTCCCCTTGTCAGGAGG-G
363129_ENSRNOG00000007590_RAT_8238_8352/1-119       CTCAACTGCTGTTTCTTCC-TGCAGGTCTCTCCTCCTCCCCTCCCCTTGTCAAGAGGA-
                                                    *** ** * ****** *** * ******* **  ***  *****               

363129-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 119
 Mean pairwise identity:  73.50
 Mean single sequence MFE: -41.38
 Consensus MFE: -17.66
 Energy contribution: -17.22
 Covariance contribution:  -0.44
 Mean z-score:  -2.67
 Structure conservation index:   0.43
 SVM decision value:   1.06
 SVM RNA-class probability: 0.908895
 Prediction: RNA

######################################################################

>363129_ENSG00000104313_HUMAN_8175_8288/1-119
CAAAAGAGAAAAAGGAGGAUACUGCAGCAGUGAAAGGCAUAUUGUCUUUAAGUUGAGGUCUCAACUGUUGUUUCCUCCUGCAGGUCUAUCCUCCUCCUCCCCUUGUCAGGGGGG
............(((((((((((((((.((.(((((((.....)))....((((((....))))))....)))))).))))))...))))))))).(((((((....))))))) ( -44.40)
>363129_ENSDARG00000014259_ZEBRAFISH_7973_8070/1-119
CAGAAGGGGAAGAGAGGAGUCGGUGGAACAGAGAGGCACAUUGUCUGUAGGUUCAACCCCUCCACCGUUGUUUCCUCCUUCCAGGUCUUCCCUCCUCC
....((((((((.((((((.((((((((((((.((.....)).))))).((.....))..)))))))....)))))))))))(((.....)))))).. ( -38.60)
>363129_ENSMUSG00000025932_MOUSE_8198_8313/1-119
CAAACGAGAAAAGGGAGGAUACUGCAGCCAGGAAAGGCAUAGUGUCUUUAAGUGGAGGGCUCAACUGUUGUUUCUUCCUGCAGGUCUAUCCUCCUCCCCUCCCCUUGUCAGGAGGG
............(((((((((((((((..(((((..(((..(.((((((.....)))))).)...)))..)))))..))))))...))))))))).((((((........)))))) ( -44.40)
>363129_ENSRNOG00000007590_RAT_8238_8352/1-119
AAAAGAGAAAAGGGAGGAUACUGCGGCCAGGAAAGGCAUAGUAUCUUUAAGUGGAGGGCUCAACUGCUGUUUCUUCCUGCAGGUCUCUCCUCCUCCCCUCCCCUUGUCAAGAGGA
....(((....((((((((((((..(((......))).))))))).....(.((((((.....((((...........))))..)))))).))))))))).((((.....)))). ( -38.10)
>consensus
CAAAAGAGAAAAAGGAGGAUACUGCAGCAAGGAAAGGCAUAGUGUCUUUAAGUG_GAGGGCUCAACUGUUGUUUCCUCC_UGCAGGUCUAUCCUCCU__CCUCCCCUUGUCAGGAGG__
.....(((.....((((((.((.((((.....((((((.....)))))).((........))...)))).)).))))))....(((........)))...)))................ (-17.66 = -17.22 +  -0.44) 

363129-rev.rnaz

RNAalifold consensus structure

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