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Results for CNB 294591

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

294591_ENSG00000127946_HUMAN_4733_4795/1-84        T------------------CTCTGAGATACAGA-AATGAAT-TGAGTGACATGAGCAGGA
294591_ENSRNOG00000001448_RAT_6554_6618/1-84       C------------------TTCTGGTCTGTGGTCAACCGAC-TGCCTCTCTCCAGCAACG
294591_ENSMUSG00000039959_MOUSE_6943_7007/1-84     C------------------TTTTGGTCTGTGGTCAACCGAC-TGCCTCTCTCCAGCAACG
294591_ENSDARG00000012291_ZEBRAFISH_7984_8065/1-84 -TTTTCTTTCTCTTTTCTTTCTTCTTCCACAGGCGGTGAGCATCAATAAAGCCATCAACA
294591_SINFRUG00000139764_FUGU_8576_8640/1-84      C------------------TTCTGGGCGGCCGTCACCCGAC-TTCCTCTGTCCAGCAACG
                                                                         *   . .  *  .   ..  * . * :    * **. .


294591_ENSG00000127946_HUMAN_4733_4795/1-84        TGTGGGTGAGTTTGGAGATGTAC-
294591_ENSRNOG00000001448_RAT_6554_6618/1-84       CCATGCTGTGCTGGAAGTTCTGCC
294591_ENSMUSG00000039959_MOUSE_6943_7007/1-84     CCATGCTGTGCTGGAAGTTTTGTC
294591_ENSDARG00000012291_ZEBRAFISH_7984_8065/1-84 CACAGGAG-GTTGCTGTCAAAGAG
294591_SINFRUG00000139764_FUGU_8576_8640/1-84      CTGTGCTCTGCTGGAAATTCTGCC
                                                       * :  * *   .  : :.  


//

294591.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 84
 Mean pairwise identity:  46.28
 Mean single sequence MFE: -16.14
 Consensus MFE:  -4.46
 Energy contribution:  -4.26
 Covariance contribution:  -0.20
 Mean z-score:  -0.62
 Structure conservation index:   0.28
 SVM decision value:   0.56
 SVM RNA-class probability: 0.780280
 Prediction: RNA

######################################################################

>294591_ENSG00000127946_HUMAN_4733_4795/1-84
UCUCUGAGAUACAGAAAUGAAUUGAGUGACAUGAGCAGGAUGUGGGUGAGUUUGGAGAUGUAC
((((..((...((....))..........(((..((.....))..)))..))..))))..... ( -10.90)
>294591_ENSRNOG00000001448_RAT_6554_6618/1-84
CUUCUGGUCUGUGGUCAACCGACUGCCUCUCUCCAGCAACGCCAUGCUGUGCUGGAAGUUCUGCC
((((..((..(..(((....)))..).......(((((......))))).))..))))....... ( -19.10)
>294591_ENSMUSG00000039959_MOUSE_6943_7007/1-84
CUUUUGGUCUGUGGUCAACCGACUGCCUCUCUCCAGCAACGCCAUGCUGUGCUGGAAGUUUUGUC
..........(..(((....)))..).....(((((((..((...))..)))))))......... ( -17.40)
>294591_ENSDARG00000012291_ZEBRAFISH_7984_8065/1-84
UUUUCUUUCUCUUUUCUUUCUUCUUCCACAGGCGGUGAGCAUCAAUAAAGCCAUCAACACACAGGAGGUUGCUGUCAAAGAG
........((((((........(((((...(..((((.((.........))))))..).....)))))........)))))) ( -13.49)
>294591_SINFRUG00000139764_FUGU_8576_8640/1-84
CUUCUGGGCGGCCGUCACCCGACUUCCUCUGUCCAGCAACGCUGUGCUCUGCUGGAAAUUCUGCC
......(((((..(((....)))........(((((((..((...))..)))))))....))))) ( -19.80)
>consensus
C__________________UUCUGGUCUGCAGUCAACCGAC_UGCCUCUCUCCAGCAACGCCAUGCUGUGCUGGAAGUUCUGCC
..................................................((((((.............))))))......... ( -4.46 =  -4.26 +  -0.20) 

294591.rnaz

RNAalifold consensus structure

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