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Results for CNB 146100

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

146100_ENSG00000168267_HUMAN_9681_9773/1-93        CGCTCTGATTGGCTGGCGCGATGGGTCCCTGGCACGCGCCTATGGATGTTGTTATAAGAA
146100_ENSMUSG00000026735_MOUSE_9698_9790/1-93     CGCTCTGATTGGCTGGCGCGCCGGGTCCCTGGCACGCGCCTGTGGATGTAGTTATAAGAA
146100_ENSDARG00000014479_ZEBRAFISH_9812_9890/1-93 -GCGCTGATTGGTTGGCGCTTACGGTCAATGGCACGCGACTATGGATGTAGTTATAAGAG
146100_ENSRNOG00000016902_RAT_9689_9779/1-93       -GCTCTGATTGGCTGGCGCGCGGGGTCCCTGGCACGCGCCTGTGGATGTAGTTATAAGAA
                                                    ** ******** ******    ****  ********* ** ******* ********* 


146100_ENSG00000168267_HUMAN_9681_9773/1-93        TCCTCGCGTGCCGGCCCTCAGCTCCAGGAAGTC
146100_ENSMUSG00000026735_MOUSE_9698_9790/1-93     TCCTCGCGTGCCGGCCCTCAGCTCCAGCAAGCG
146100_ENSDARG00000014479_ZEBRAFISH_9812_9890/1-93 TCCTCGCGTGCCGCCTTTCA-------------
146100_ENSRNOG00000016902_RAT_9689_9779/1-93       TCCTCGCGTGCCGGCCCTCAACTCCAGCAAGC-
                                                   ************* *  ***             


//

146100.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 93
 Mean pairwise identity:  81.65
 Mean single sequence MFE: -38.33
 Consensus MFE: -27.75
 Energy contribution: -30.12
 Covariance contribution:   2.38
 Mean z-score:  -2.00
 Structure conservation index:   0.72
 SVM decision value:   0.95
 SVM RNA-class probability: 0.887403
 Prediction: RNA

######################################################################

>146100_ENSG00000168267_HUMAN_9681_9773/1-93
CGCUCUGAUUGGCUGGCGCGAUGGGUCCCUGGCACGCGCCUAUGGAUGUUGUUAUAAGAAUCCUCGCGUGCCGGCCCUCAGCUCCAGGAAGUC
......((((..((((.((...(((((...((((((((.....((((.((......)).)))).)))))))))))))...)).))))..)))) ( -39.40)
>146100_ENSMUSG00000026735_MOUSE_9698_9790/1-93
CGCUCUGAUUGGCUGGCGCGCCGGGUCCCUGGCACGCGCCUGUGGAUGUAGUUAUAAGAAUCCUCGCGUGCCGGCCCUCAGCUCCAGCAAGCG
((((.......(((((.((...(((((...((((((((.....((((.((....))...)))).)))))))))))))...)).))))).)))) ( -41.40)
>146100_ENSDARG00000014479_ZEBRAFISH_9812_9890/1-93
GCGCUGAUUGGUUGGCGCUUACGGUCAAUGGCACGCGACUAUGGAUGUAGUUAUAAGAGUCCUCGCGUGCCGCCUUUCA
((((..(....)..))))....(((....(((((((((....((((.((....))...))))))))))))))))..... ( -31.60)
>146100_ENSRNOG00000016902_RAT_9689_9779/1-93
GCUCUGAUUGGCUGGCGCGCGGGGUCCCUGGCACGCGCCUGUGGAUGUAGUUAUAAGAAUCCUCGCGUGCCGGCCCUCAACUCCAGCAAGC
(((.(((..(((((((((((((((((((.(((....))).).)))(((....))).....))))))))))))))).))).....))).... ( -40.90)
>consensus
_GCUCUGAUUGGCUGGCGCGCAGGGUCCCUGGCACGCGCCUAUGGAUGUAGUUAUAAGAAUCCUCGCGUGCCGGCCCUCAGCUCCAGCAAGC_
...........(((((.((...(((((...((((((((.....((((............)))).)))))))))))))...)).)))))..... (-27.75 = -30.12 +   2.38) 

146100.rnaz

RNAalifold consensus structure

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