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Results for CNB 410996-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


410996_ENSG00000137324_HUMAN_997_1076/1-86         GAGGCCAATTAAAGGCCTTCTGGGAACTGTAGTTCTCTTTGG-TT--AACTA---TTCCA
410996_ENSMUSG00000013787_MOUSE_852_932/1-86       -AGGCCAATTCGGCATCTTATGGGAACTGTAGTCCTCTTTGGATT--AAAAACT-TTTCA
410996_ENSRNOG00000000884_RAT_1097_1180/1-86       GAGGCCAATTCGGCGTCTTCTGGGAACTGTAGTTCTCTTTGGATTTAAAAAACT-TTTCA
410996_ENSDARG00000013786_ZEBRAFISH_1268_1350/1-86 GAGGCCAATACAAGGCCTTCTGGGAGCTGTAGTCCTCTTTGG-TT--AAGAACTATTCCA
                                                    ********       *** ***** ******* ******** **  **  *   ** **


410996_ENSG00000137324_HUMAN_997_1076/1-86         GAGCTTTCTGGGAATTGTAGTTTTCC
410996_ENSMUSG00000013787_MOUSE_852_932/1-86       GAGCTTTCTGGGAATTGTAGTCTTC-
410996_ENSRNOG00000000884_RAT_1097_1180/1-86       GAGCTTTCTGGGAAATGTAGTCTTC-
410996_ENSDARG00000013786_ZEBRAFISH_1268_1350/1-86 GAGCTTTCTGGGAATTGTAGTCTTCT
                                                   ************** ****** *** 

410996-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 86
 Mean pairwise identity:  84.16
 Mean single sequence MFE: -22.12
 Consensus MFE: -14.51
 Energy contribution: -15.70
 Covariance contribution:   1.19
 Mean z-score:  -1.54
 Structure conservation index:   0.66
 SVM decision value:  -0.06
 SVM RNA-class probability: 0.502500
 Prediction: RNA

######################################################################

>410996_ENSG00000137324_HUMAN_997_1076/1-86
GAGGCCAAUUAAAGGCCUUCUGGGAACUGUAGUUCUCUUUGGUUAACUAUUCCAGAGCUUUCUGGGAAUUGUAGUUUUCC
((((((.......))))))..((((((....))))))...((..(((((((((((......)))))....))))))..)) ( -27.00)
>410996_ENSMUSG00000013787_MOUSE_852_932/1-86
AGGCCAAUUCGGCAUCUUAUGGGAACUGUAGUCCUCUUUGGAUUAAAAACUUUUCAGAGCUUUCUGGGAAUUGUAGUCUUC
..(((.....))).......((((.(((((((((.....)))))).....((..(((......)))..))...))))))). ( -17.70)
>410996_ENSRNOG00000000884_RAT_1097_1180/1-86
GAGGCCAAUUCGGCGUCUUCUGGGAACUGUAGUUCUCUUUGGAUUUAAAAAACUUUUCAGAGCUUUCUGGGAAAUGUAGUCUUC
((.(((.....))).))(((.((((((....))))))...)))..........((..(((......)))..))........... ( -19.80)
>410996_ENSDARG00000013786_ZEBRAFISH_1268_1350/1-86
GAGGCCAAUACAAGGCCUUCUGGGAGCUGUAGUCCUCUUUGGUUAAGAACUAUUCCAGAGCUUUCUGGGAAUUGUAGUCUUCU
((((....(((((..(((...(..(((((((((..((((.....))))))))).....))))..).)))..)))))..)))). ( -24.00)
>consensus
GAGGCCAAUUCAACGCCUUCUGGGAACUGUAGUCCUCUUUGG_UU__AAAAACU_UUCCAGAGCUUUCUGGGAAUUGUAGUCUUC_
(((((((((((...((((...((((((....))))))...)))).............((((......))))))))))..))))).. (-14.51 = -15.70 +   1.19) 

410996-rev.rnaz

RNAalifold consensus structure

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