Index >

Results for CNB 430453-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


430453_ENSG00000114315_HUMAN_9189_9371/1-197        -CTCTATATATATCTGGGACTGCACGCGAACGGCTCGTGTGAAACTTCCCAAACTTTCTT
430453_SINFRUG00000139781_FUGU_9492_9685/1-197      T-TGTATTTATATCTCGCCCTGCACGCGAACGGCTCGTGTGAAACTTCCCAAACTTTCTT
430453_ENSMUSG00000022528_MOUSE_9551_9732/1-197     C-TCTATATATATCTGGGACTGCACGCGAACGGCTCGTGTGAAACTTCCCAAACTTTCTT
430453_ENSRNOG00000001720_RAT_9278_9459/1-197       C-TCTATATATATCTGGGACTGCACGCGAACGGCTCGTGTGAAACTTCCCAAACTTTCTT
430453_ENSDARG00000006514_ZEBRAFISH_9576_9769/1-197 T-CTTATTTATATCTCCGGCTGCACGCGAACGGCTCGTGTGAAACTTCCCAAACTTTCTT
                                                        *** *******    *****************************************


430453_ENSG00000114315_HUMAN_9189_9371/1-197        TCCCACAGTAACTTTCAGCCAATGGGAGGAGGAGACACGCGGC-----------ACCGCT
430453_SINFRUG00000139781_FUGU_9492_9685/1-197      TCCCACAGTAACTTTCCACCAATCAGGGAGAGGGACACGCGGCCCGA-GGGAGGACGGCT
430453_ENSMUSG00000022528_MOUSE_9551_9732/1-197     TCCCACAGTAACTTTCAGCCAATGGGAGGAAGAGACACGCGGC-----------ACCGCT
430453_ENSRNOG00000001720_RAT_9278_9459/1-197       TCCCACAGTAACTTTCAGCCAATGGGAGGAAGAGACACGCGGC-----------ACCGCT
430453_ENSDARG00000006514_ZEBRAFISH_9576_9769/1-197 TCCCACAGTAACTTTCTACCAATCAGCGCGCGGGACACGCGGCCCGAGGGGAGGATGGCT
                                                    ****************  *****  * *   * **********           *  ***


430453_ENSG00000114315_HUMAN_9189_9371/1-197        CGTGGACCGCGCCCCCCCATTGGCCGCCAGGCA-CAAGGTCTGGCGGCCAATGGCGCG-C
430453_SINFRUG00000139781_FUGU_9492_9685/1-197      CGTGGTCGGCGCCCTCCCATTGGTTGTTTGACAGCTCGAGCTGGCGGCCAATGGCGCGAG
430453_ENSMUSG00000022528_MOUSE_9551_9732/1-197     CGTGGACTGCGCCCCCCCATTGGCCGCTAGGCA-CAAGGTCTGGCGGCCAATGGCGCG-C
430453_ENSRNOG00000001720_RAT_9278_9459/1-197       CGTGGACTGCGCCCCCCCATTGGCCGCCAGGCA-CAAGGTCTGGCGGCCAATGGCGCG-C
430453_ENSDARG00000006514_ZEBRAFISH_9576_9769/1-197 CGTGGTCGGCGCCCCTCCATTGGTTGTTTAGCG-TTTGAGCGGGTGGCCAATGGCGCG-C
                                                    ***** * ******  *******  *     *     *  * ** *************  


430453_ENSG00000114315_HUMAN_9189_9371/1-197        GCCTGAGCCCAGGGCAC
430453_SINFRUG00000139781_FUGU_9492_9685/1-197      GCCCGGGTTCAGGGCA-
430453_ENSMUSG00000022528_MOUSE_9551_9732/1-197     GCCTGAGCCCGGGGCA-
430453_ENSRNOG00000001720_RAT_9278_9459/1-197       GCCTGAGCCCAGGGCA-
430453_ENSDARG00000006514_ZEBRAFISH_9576_9769/1-197 GGCCGGGTTTAGGGCAC
                                                    * * * *    *****

430453-rev.aln

RNAz output


############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 197
 Mean pairwise identity:  82.38
 Mean single sequence MFE: -79.64
 Consensus MFE: -58.44
 Energy contribution: -59.58
 Covariance contribution:   1.14
 Mean z-score:  -2.41
 Structure conservation index:   0.73
 SVM decision value:   1.57
 SVM RNA-class probability: 0.965022
 Prediction: RNA

######################################################################

>430453_ENSG00000114315_HUMAN_9189_9371/1-197
CUCUAUAUAUAUCUGGGACUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCAGCCAAUGGGAGGAGGAGACACGCGGCACCGCUCGUGGACCGCGCCCCCCCAUUGGCCGCCAGGCACAAGGUCUGGCGGCCAAUGGCGCGCGCCUGAGCCCAGGGCAC
...........((((((.((.(((((((.(((.(((((((...(((((...........(((((..((........))...))))))))))...)))))))..))).)))))...(((((....((((((((((((((((.....)))))))))))))))).)))))..)))))))))).... ( -83.00)
>430453_SINFRUG00000139781_FUGU_9492_9685/1-197
UUGUAUUUAUAUCUCGCCCUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCCACCAAUCAGGGAGAGGGACACGCGGCCCGAGGGAGGACGGCUCGUGGUCGGCGCCCUCCCAUUGGUUGUUUGACAGCUCGAGCUGGCGGCCAAUGGCGCGAGGCCCGGGUUCAGGGCA
...............(((((((((((((.....)))))))......(((....(..(((((((.....................)))))))..)...(.((((((((((....((((.....))))...)))))(((((((((((....((((....)))))))))))))))...).))))))))..)))))). ( -79.50)
>430453_ENSMUSG00000022528_MOUSE_9551_9732/1-197
CUCUAUAUAUAUCUGGGACUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCAGCCAAUGGGAGGAAGAGACACGCGGCACCGCUCGUGGACUGCGCCCCCCCAUUGGCCGCUAGGCACAAGGUCUGGCGGCCAAUGGCGCGCGCCUGAGCCCGGGGCA
...........((((((.((((.(((((.(((.(((((((...(((((...........(((((..((........))...))))))))))...)))))))..))).)))))....((((....((((((((((((((((.....)))))))))))))))).))))))...))))))))... ( -79.80)
>430453_ENSRNOG00000001720_RAT_9278_9459/1-197
CUCUAUAUAUAUCUGGGACUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCAGCCAAUGGGAGGAAGAGACACGCGGCACCGCUCGUGGACUGCGCCCCCCCAUUGGCCGCCAGGCACAAGGUCUGGCGGCCAAUGGCGCGCGCCUGAGCCCAGGGCA
...........((((((.((((.(((((.(((.(((((((...(((((...........(((((..((........))...))))))))))...)))))))..))).)))))....((((....((((((((((((((((.....)))))))))))))))).))))))...))))))))... ( -82.80)
>430453_ENSDARG00000006514_ZEBRAFISH_9576_9769/1-197
UCUUAUUUAUAUCUCCGGCUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCUACCAAUCAGCGCGCGGGACACGCGGCCCGAGGGGAGGAUGGCUCGUGGUCGGCGCCCCUCCAUUGGUUGUUUAGCGUUUGAGCGGGUGGCCAAUGGCGCGCGGCCGGGUUUAGGGCAC
.........((..(((((((((.(((....(((.((((((.....((((.................(((......)))......(....)))))))))))))).((((((....((((.....))))...))))))(((((((..(((.((......)))))..)))))))))).)))))))))..))...... ( -73.10)
>consensus
C_UCUAUAUAUAUCUGGGACUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCAGCCAAUGGGAGGAAGAGACACGCGGC___________ACCGCUCGUGGACGGCGCCCCCCCAUUGGCCGCUAGGCA_CAAGGUCUGGCGGCCAAUGGCGCG_CGCCUGAGCCCAGGGCA_
..............(((((...(((((((.....))))))).....)))))...........((((.((..(((((...........)))))..))..((((.((.......)).))))..))))...(((((.....((((((((((((((......)))))))))))))))))))...((((.......)))).. (-58.44 = -59.58 +   1.14)

430453-rev.rnaz

RNAalifold consensus structure

Secondary Structure Dot Plot
PS | PDF PS | PDF
Stefan Washietl
Last modified: Thu Aug 12 14:35:44 CEST 2004