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Results for CNB 57635

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

57635_ENSG00000187049_HUMAN_9283_9374/1-92  CTCCACCCCGCTGGAAATCCTGTTCTTTCTGAACGGGTGGTATAATGCTACCTATTTCCT
57635_ENSMUSG00000024667_MOUSE_548_639/1-92 CTCAACCCCCCTGGAAGTCCTGTTCTTTCTGAATGGGTGGTACTATGCTACCTATTTCCT
57635_SINFRUG00000151838_FUGU_606_695/1-92  -TCGACTCCTCTGCAGGTTCTCCTCTACCTCAACCAATGGTTCTTTGCTGCCTTCTACCT
57635_ENSRNOG00000020692_RAT_9465_9554/1-92 -TCAACCCCTCTGGAAATCCTGTTCTTTCTGAATGGGTGGTACTATGCTACCTATTTCCT
                                             ** ** ** *** *  * **  ***  ** **    ****    **** ***  * ***


57635_ENSG00000187049_HUMAN_9283_9374/1-92  GCTGGAACTTTTCATATTTCTGTATAAAGGTA
57635_ENSMUSG00000024667_MOUSE_548_639/1-92 GCTGGAGCTCCTTATTTTCCTGTACAAAGGTA
57635_SINFRUG00000151838_FUGU_606_695/1-92  GGTGGAGGTTCTGATCTTCATCTACAAAGGT-
57635_ENSRNOG00000020692_RAT_9465_9554/1-92 GCTGGAGCTCCTTATTTTCCTGTACAAAGGT-
                                            * ****  *  * ** **  * ** ****** 


//

57635.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 92
 Mean pairwise identity:  77.45
 Mean single sequence MFE: -23.31
 Consensus MFE: -15.33
 Energy contribution: -16.15
 Covariance contribution:   0.81
 Mean z-score:  -2.27
 Structure conservation index:   0.66
 SVM decision value:   1.84
 SVM RNA-class probability: 0.979565
 Prediction: RNA

######################################################################

>57635_ENSG00000187049_HUMAN_9283_9374/1-92
CUCCACCCCGCUGGAAAUCCUGUUCUUUCUGAACGGGUGGUAUAAUGCUACCUAUUUCCUGCUGGAACUUUUCAUAUUUCUGUAUAAAGGUA
......((.((.(((((((((((((.....))))))).((((......)))).)))))).)).)).((((((.((((....)))))))))). ( -27.10)
>57635_ENSMUSG00000024667_MOUSE_548_639/1-92
CUCAACCCCCCUGGAAGUCCUGUUCUUUCUGAAUGGGUGGUACUAUGCUACCUAUUUCCUGCUGGAGCUCCUUAUUUUCCUGUACAAAGGUA
....(((.....(((((....(((((..(.(((((((((((.....)))))))))))...)..))))).......)))))........))). ( -22.42)
>57635_SINFRUG00000151838_FUGU_606_695/1-92
UCGACUCCUCUGCAGGUUCUCCUCUACCUCAACCAAUGGUUCUUUGCUGCCUUCUACCUGGUGGAGGUUCUGAUCUUCAUCUACAAAGGU
......(((.((.((((((.((((((((.........(((........)))........))))))))....)).....)))).)).))). ( -21.13)
>57635_ENSRNOG00000020692_RAT_9465_9554/1-92
UCAACCCCUCUGGAAAUCCUGUUCUUUCUGAAUGGGUGGUACUAUGCUACCUAUUUCCUGCUGGAGCUCCUUAUUUUCCUGUACAAAGGU
...........(((..(((.((.......(((((((((((.....)))))))))))...)).)))..))).......(((......))). ( -22.60)
>consensus
_UCAACCCCUCUGGAAAUCCUGUUCUUUCUGAACGGGUGGUACUAUGCUACCUAUUUCCUGCUGGAGCUCCUUAUUUUCCUGUACAAAGGU_
....(((.....(((((....(((((..(.(((((((((((.....)))))))))))...)..))))).......)))))........))). (-15.33 = -16.15 +   0.81) 

57635.rnaz

RNAalifold consensus structure

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