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Results for CNB 264053

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

264053_ENSG00000185045_HUMAN_8824_8931/1-109    -CCTCAGTTTCACTGCCATGGTTTCCACTCCTGAGAACCACCAGACTTTCATCAACTCAG
264053_ENSMUSG00000043873_MOUSE_5451_5559/1-109 CCCTCAGGTTCAGTGCCATGGTCTCCACTCCACACAACCAACAGACTTTCATTAACTCAG
264053_ENSRNOG00000016972_RAT_9893_10000/1-109  CCCCTAGTTTCACCACCATGGTTTCCACTTCTCAGAACCGCCAGACCTTTATTACCTCAG
264053_SINFRUG00000153198_FUGU_1686_1791/1-109  CC---AGATTCACCACAATGGTGTCAACACAAACCAGCAGAAGCAAATTCATCCAGTCCT
                                                 *   ** ****   * ***** ** **       * *      *  ** **    **  


264053_ENSG00000185045_HUMAN_8824_8931/1-109    TCATCAAATTCCTGCGCCAGTATGAGTTTGACGGGCTGGACTTTGACTG
264053_ENSMUSG00000043873_MOUSE_5451_5559/1-109 CCATCAAATTCCTGCGCCAGTATGGGTTTGATGGACTGAACCTGGACTG
264053_ENSRNOG00000016972_RAT_9893_10000/1-109  TCATCAAATTCCTGCGACAGTATGGGTTTGATGGACTGGACCTGGACT-
264053_SINFRUG00000153198_FUGU_1686_1791/1-109  CCATCAAACAGCTGAGAAAATACGGATTTGATGGCCTGGATCTGGACTG
                                                 *******   *** *  * ** *  ***** ** *** *  * **** 


//

264053.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 109
 Mean pairwise identity:  72.63
 Mean single sequence MFE: -29.50
 Consensus MFE: -18.00
 Energy contribution: -20.25
 Covariance contribution:   2.25
 Mean z-score:  -2.36
 Structure conservation index:   0.61
 SVM decision value:   2.78
 SVM RNA-class probability: 0.996975
 Prediction: RNA

######################################################################

>264053_ENSG00000185045_HUMAN_8824_8931/1-109
CCUCAGUUUCACUGCCAUGGUUUCCACUCCUGAGAACCACCAGACUUUCAUCAACUCAGUCAUCAAAUUCCUGCGCCAGUAUGAGUUUGACGGGCUGGACUUUGACUG
...(((((...(((...(((((..((....))..))))).)))............((((((.((((((((.(((....))).))))))))..)))))).....))))) ( -29.00)
>264053_ENSMUSG00000043873_MOUSE_5451_5559/1-109
CCCUCAGGUUCAGUGCCAUGGUCUCCACUCCACACAACCAACAGACUUUCAUUAACUCAGCCAUCAAAUUCCUGCGCCAGUAUGGGUUUGAUGGACUGAACCUGGACUG
...(((((((((((....(((........)))............................(((((((((((.(((....))).)))))))))))))))))))))).... ( -35.40)
>264053_ENSRNOG00000016972_RAT_9893_10000/1-109
CCCCUAGUUUCACCACCAUGGUUUCCACUUCUCAGAACCGCCAGACCUUUAUUACCUCAGUCAUCAAAUUCCUGCGACAGUAUGGGUUUGAUGGACUGGACCUGGACU
...((((............(((((..........))))).................(((((((((((((((.(((....))).))))))))).))))))..))))... ( -24.80)
>264053_SINFRUG00000153198_FUGU_1686_1791/1-109
CCAGAUUCACCACAAUGGUGUCAACACAAACCAGCAGAAGCAAAUUCAUCCAGUCCUCCAUCAAACAGCUGAGAAAAUACGGAUUUGAUGGCCUGGAUCUGGACUG
.(((...((((.....))))..........((((..(((.....)))((((((....((((((((...(((........))).)))))))).)))))))))).))) ( -28.80)
>consensus
CCCUCAGUUUCACCACCAUGGUUUCCACUCCACACAACCAACAGACUUUCAUCAACUCAGCCAUCAAAUUCCUGCGACAGUAUGGGUUUGAUGGACUGGACCUGGACUG
...(((((((((......((((((..........))))))....................(((((((((((.(((....))).)))))))))))..))))))))).... (-18.00 = -20.25 +   2.25) 

264053.rnaz

RNAalifold consensus structure

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