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Results for CNB 110574-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


110574_ENSG00000135363_HUMAN_9031_9129/1-99    AGCTTCCCTCTGTCTCTGGTTTCATTTCCTTTTTCCTGATCACGATTCAAATACAATAGA
110574_ENSMUSG00000032698_MOUSE_9378_9473/1-99 AGCTTCCCTCTGTCTCTGGTTTCATTTCCTTTTTCCTGATCACGATTCAAATACAATAGA
110574_SINFRUG00000125277_FUGU_5973_6069/1-99  -GCCCCCCTCGGCCTCTGCTTTCGTTTCCCTCTTCCTGCTCACGACTGTTTGACAATAGG
110574_ENSRNOG00000009401_RAT_9054_9149/1-99   AGCTTCCCTCTGTCTCTGGTTTCATTTCCTTTTTCCTGATCACGATTCAAATACAATAGA
                                                **  ***** * ***** **** ***** * ****** ****** *     ******* 


110574_ENSG00000135363_HUMAN_9031_9129/1-99    AGGAAATCACATTTAAAGAGACAGCTGCCCGGTCCCCCC
110574_ENSMUSG00000032698_MOUSE_9378_9473/1-99 AGGAAATCACATTTAAAGAGACAGCTGCCCG---CCCCC
110574_SINFRUG00000125277_FUGU_5973_6069/1-99  GGGAAATGGGTCTTAAAGCGACAGTTGATCGCGGCTCC-
110574_ENSRNOG00000009401_RAT_9054_9149/1-99   AGGAAATCACATTTAAAGAGACAGCTGCCCG---CCCCC
                                                ******     ****** ***** **  **   * ** 

110574-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 99
 Mean pairwise identity:  82.74
 Mean single sequence MFE: -21.95
 Consensus MFE: -16.03
 Energy contribution: -15.85
 Covariance contribution:  -0.19
 Mean z-score:  -1.67
 Structure conservation index:   0.73
 SVM decision value:   0.30
 SVM RNA-class probability: 0.677336
 Prediction: RNA

######################################################################

>110574_ENSG00000135363_HUMAN_9031_9129/1-99
AGCUUCCCUCUGUCUCUGGUUUCAUUUCCUUUUUCCUGAUCACGAUUCAAAUACAAUAGAAGGAAAUCACAUUUAAAGAGACAGCUGCCCGGUCCCCCC
.((......((((((((......((((((((((...(((.......)))........)))))))))).........))))))))..))........... ( -18.86)
>110574_ENSMUSG00000032698_MOUSE_9378_9473/1-99
AGCUUCCCUCUGUCUCUGGUUUCAUUUCCUUUUUCCUGAUCACGAUUCAAAUACAAUAGAAGGAAAUCACAUUUAAAGAGACAGCUGCCCGCCCCC
.((......((((((((......((((((((((...(((.......)))........)))))))))).........))))))))......)).... ( -19.76)
>110574_SINFRUG00000125277_FUGU_5973_6069/1-99
GCCCCCCUCGGCCUCUGCUUUCGUUUCCCUCUUCCUGCUCACGACUGUUUGACAAUAGGGGGAAAUGGGUCUUAAAGCGACAGUUGAUCGCGGCUCC
(((.(..(((((...(((((((((((((((((...((.(((........)))))..))))))))))))......)))))...)))))..).)))... ( -29.40)
>110574_ENSRNOG00000009401_RAT_9054_9149/1-99
AGCUUCCCUCUGUCUCUGGUUUCAUUUCCUUUUUCCUGAUCACGAUUCAAAUACAAUAGAAGGAAAUCACAUUUAAAGAGACAGCUGCCCGCCCCC
.((......((((((((......((((((((((...(((.......)))........)))))))))).........))))))))......)).... ( -19.76)
>consensus
AGCUUCCCUCUGUCUCUGGUUUCAUUUCCUUUUUCCUGAUCACGAUUCAAAUACAAUAGAAGGAAAUCACAUUUAAAGAGACAGCUGCCCG___CCCCC
.........((((((((......((((((((((........................)))))))))).........))))))))............... (-16.03 = -15.85 +  -0.19) 

110574-rev.rnaz

RNAalifold consensus structure

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