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Results for CNB 501835

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

501835_ENSG00000007968_HUMAN_9396_9461/1-67        -AGCAGCCAACCGGAGCGCGGCATTTTCCGCGGGAGATCCGAATTTCGCGGCACGACGTT
501835_ENSDARG00000011314_ZEBRAFISH_5332_5397/1-67 -AGCAGCCAATCGCTGCGCGCCTCTAACCGCGGGAGATCCAAATTTCGCGGGACGTAATT
501835_ENSMUSG00000018983_MOUSE_3713_3779/1-67     TAGCAGCCAATCGAGGCGCGGCATTTTCCGCGGGAGATCCGAATTTGGCGGCATATAGTT
501835_SINFRUG00000152207_FUGU_3866_3931/1-67      -GGCAGCCAATCAGAGGCCGACTTCAACCGCGGGAGATCTAAATTTCGCGGGACCAAGTT
                                                     ******** *   *  ** *     ************  ***** **** *     **


501835_ENSG00000007968_HUMAN_9396_9461/1-67        TGGCGCT
501835_ENSDARG00000011314_ZEBRAFISH_5332_5397/1-67 TGGCGCT
501835_ENSMUSG00000018983_MOUSE_3713_3779/1-67     TGGCGCT
501835_SINFRUG00000152207_FUGU_3866_3931/1-67      TGGCGCT
                                                   *******


//

501835.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 67
 Mean pairwise identity:  79.20
 Mean single sequence MFE: -24.80
 Consensus MFE: -18.71
 Energy contribution: -19.03
 Covariance contribution:   0.31
 Mean z-score:  -1.58
 Structure conservation index:   0.75
 SVM decision value:   0.29
 SVM RNA-class probability: 0.674071
 Prediction: RNA

######################################################################

>501835_ENSG00000007968_HUMAN_9396_9461/1-67
AGCAGCCAACCGGAGCGCGGCAUUUUCCGCGGGAGAUCCGAAUUUCGCGGCACGACGUUUGGCGCU
(((.(((((.((..(.((((......))(((..(........)..))).)).)..)).)))))))) ( -24.40)
>501835_ENSDARG00000011314_ZEBRAFISH_5332_5397/1-67
AGCAGCCAAUCGCUGCGCGCCUCUAACCGCGGGAGAUCCAAAUUUCGCGGGACGUAAUUUGGCGCU
.(((((.....)))))(((((..((.(((((..(........)..)))))....))....))))). ( -29.20)
>501835_ENSMUSG00000018983_MOUSE_3713_3779/1-67
UAGCAGCCAAUCGAGGCGCGGCAUUUUCCGCGGGAGAUCCGAAUUUGGCGGCAUAUAGUUUGGCGCU
.(((.(((((((....(((((......)))))((....))))..)))))(.((.......)).)))) ( -21.20)
>501835_SINFRUG00000152207_FUGU_3866_3931/1-67
GGCAGCCAAUCAGAGGCCGACUUCAACCGCGGGAGAUCUAAAUUUCGCGGGACCAAGUUUGGCGCU
(((.(((((.(.((((....))))..(((((..(........)..)))))......).)))))))) ( -24.40)
>consensus
_AGCAGCCAAUCGGAGCGCGGCAUUAACCGCGGGAGAUCCAAAUUUCGCGGCACGAAGUUUGGCGCU
.(((.((((((((.....)))......((((((((........))))))))........)))))))) (-18.71 = -19.03 +   0.31) 

501835.rnaz

RNAalifold consensus structure

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