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Results for CNB 456164-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


456164_ENSG00000053254_HUMAN_2206_2269/1-64        TATATCATGGCTGACAGTAAAGTAATTTAATTGCACTGTTGCTATGACAACATGCTGCTC
456164_SINFRUG00000137365_FUGU_7988_8049/1-64      -ACATTACGGCTGACAGTAAAGTCATCTCATTTTACTGTTGCTATGACAACAAACTCCTC
456164_ENSMUSG00000033713_MOUSE_7447_7508/1-64     -ATATCATGGCTGACAGTAAAGTAATTTAATTGCACTGTTGCTATGACAACATACTGCTC
456164_ENSRNOG00000004709_RAT_7742_7803/1-64       -ATATCATGGCTGACAGTAAAGTAATTTAATTGCACTGTTGCTATGACAACATACTGCTC
456164_ENSDARG00000012833_ZEBRAFISH_1704_1766/1-64 -ATATTACAGCTGACAATAAAGTAATTTAATTGCACAGTTACCATGACAACGGCGGGCTC
                                                    * ** *  ******* ****** ** * ***  ** *** * ********      ***


456164_ENSG00000053254_HUMAN_2206_2269/1-64        TCTT
456164_SINFRUG00000137365_FUGU_7988_8049/1-64      ACT-
456164_ENSMUSG00000033713_MOUSE_7447_7508/1-64     TCT-
456164_ENSRNOG00000004709_RAT_7742_7803/1-64       TCT-
456164_ENSDARG00000012833_ZEBRAFISH_1704_1766/1-64 TGTT
                                                     * 

456164-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 64
 Mean pairwise identity:  83.52
 Mean single sequence MFE: -13.66
 Consensus MFE:  -9.82
 Energy contribution: -10.78
 Covariance contribution:   0.96
 Mean z-score:  -2.27
 Structure conservation index:   0.72
 SVM decision value:   1.14
 SVM RNA-class probability: 0.921100
 Prediction: RNA

######################################################################

>456164_ENSG00000053254_HUMAN_2206_2269/1-64
UAUAUCAUGGCUGACAGUAAAGUAAUUUAAUUGCACUGUUGCUAUGACAACAUGCUGCUCUCUU
....(((((((.((((((...(((((...))))))))))))))))))................. ( -15.50)
>456164_SINFRUG00000137365_FUGU_7988_8049/1-64
ACAUUACGGCUGACAGUAAAGUCAUCUCAUUUUACUGUUGCUAUGACAACAAACUCCUCACU
...(((..((.(((((((((((......)))))))))))))..)))................ ( -14.20)
>456164_ENSMUSG00000033713_MOUSE_7447_7508/1-64
AUAUCAUGGCUGACAGUAAAGUAAUUUAAUUGCACUGUUGCUAUGACAACAUACUGCUCUCU
...(((((((.((((((...(((((...))))))))))))))))))................ ( -15.50)
>456164_ENSRNOG00000004709_RAT_7742_7803/1-64
AUAUCAUGGCUGACAGUAAAGUAAUUUAAUUGCACUGUUGCUAUGACAACAUACUGCUCUCU
...(((((((.((((((...(((((...))))))))))))))))))................ ( -15.50)
>456164_ENSDARG00000012833_ZEBRAFISH_1704_1766/1-64
AUAUUACAGCUGACAAUAAAGUAAUUUAAUUGCACAGUUACCAUGACAACGGCGGGCUCUGUU
.......(((((.(((((((....))).))))..)))))........(((((......))))) (  -7.60)
>consensus
_AUAUCAUGGCUGACAGUAAAGUAAUUUAAUUGCACUGUUGCUAUGACAACAUACUGCUCUCU_
....(((((((.((((((..(((......)))..)))))))))))))................. ( -9.82 = -10.78 +   0.96) 

456164-rev.rnaz

RNAalifold consensus structure

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