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Results for CNB 238777-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


238777_ENSG00000162779_HUMAN_9246_9320/1-75        TACTTACATGGATGGGAAGAGCAATAGCCTGTTTTCACTATCTGTGAGGAGAGTAGTGTA
238777_ENSRNOG00000024694_RAT_6756_6830/1-75       TACTTACATGGATGGGAAGAGCAGCAGCCTATTCTCGCTGTCTGTGAGGAGGGTGGTGTA
238777_ENSDARG00000006042_ZEBRAFISH_3932_4004/1-75 -ACTCACATGGATGGAAAGACTCTTAGCTTGTTTTTCTCATCTTCTAGAAGAACTGTGAA
238777_ENSMUSG00000026601_MOUSE_6994_7068/1-75     TACTTACATGGATGGGAAGAGCAACAACCTGTTCTCACTGTCTGTGAGGAGGGTGGTGTA
                                                    *** ********** ****     * * * ** *     ***   ** **    *** *


238777_ENSG00000162779_HUMAN_9246_9320/1-75        TTTGCTACAATAAAT
238777_ENSRNOG00000024694_RAT_6756_6830/1-75       TTTGCTGCAACAAAT
238777_ENSDARG00000006042_ZEBRAFISH_3932_4004/1-75 TTTGCTATAAAAAA-
238777_ENSMUSG00000026601_MOUSE_6994_7068/1-75     TTTGCTGCAACAAAT
                                                   ******  ** *** 

238777-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 75
 Mean pairwise identity:  77.11
 Mean single sequence MFE: -20.47
 Consensus MFE: -14.98
 Energy contribution: -15.35
 Covariance contribution:   0.38
 Mean z-score:  -2.07
 Structure conservation index:   0.73
 SVM decision value:   1.72
 SVM RNA-class probability: 0.973854
 Prediction: RNA

######################################################################

>238777_ENSG00000162779_HUMAN_9246_9320/1-75
UACUUACAUGGAUGGGAAGAGCAAUAGCCUGUUUUCACUAUCUGUGAGGAGAGUAGUGUAUUUGCUACAAUAAAU
..(((.(((((((((..((((((......))))))..))))))))))))...(((((......)))))....... ( -22.60)
>238777_ENSRNOG00000024694_RAT_6756_6830/1-75
UACUUACAUGGAUGGGAAGAGCAGCAGCCUAUUCUCGCUGUCUGUGAGGAGGGUGGUGUAUUUGCUGCAACAAAU
..(((.((....))..))).((((((((((.(((((((.....)))))))))))........))))))....... ( -21.80)
>238777_ENSDARG00000006042_ZEBRAFISH_3932_4004/1-75
ACUCACAUGGAUGGAAAGACUCUUAGCUUGUUUUUCUCAUCUUCUAGAAGAACUGUGAAUUUGCUAUAAAAAA
..(((((.((((((((((((.........))))))).)))))((.....))..)))))............... ( -14.70)
>238777_ENSMUSG00000026601_MOUSE_6994_7068/1-75
UACUUACAUGGAUGGGAAGAGCAACAACCUGUUCUCACUGUCUGUGAGGAGGGUGGUGUAUUUGCUGCAACAAAU
..(((.(((((((((..((((((......))))))..))))))))))))...(..((......))..)....... ( -22.80)
>consensus
UACUUACAUGGAUGGGAAGAGCAACAGCCUGUUCUCACUAUCUGUGAGGAGAGUGGUGUAUUUGCUACAACAAAU
..(((((..((((((..((((((......))))))..)))))))))))....(((((......)))))....... (-14.98 = -15.35 +   0.38) 

238777-rev.rnaz

RNAalifold consensus structure

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