Index >

Results for CNB 83240-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


83240_ENSG00000075292_HUMAN_9792_9941/1-155        GCAACGGCATTCAGCTGCTGAAGCGCCAACTGAGTCTTAATCTGAGCAAAGTGCAAAGGA
83240_ENSDARG00000004048_ZEBRAFISH_8782_8931/1-155 -CAATTGCATTCAGCTGGTGCAGTGCCAACTGAGTCTTTATCTGTGCCAACTGC-AGGGA
83240_ENSMUSG00000030016_MOUSE_9792_9941/1-155     GCAACGGCATTCAGCTGCTGAAGCGCCAACTGAGTCTCAATCTGAGCAAAGCGCAAAGGA
83240_ENSRNOG00000014501_RAT_9792_9941/1-155       GCAACGGCATTCAGCTGCTGAAGCGCCAACTGAGTCTTAATCTGAGCAAAGTGCAAAGGA
                                                    ***  *********** ** ** *************  ***** ** **  ** * ***


83240_ENSG00000075292_HUMAN_9792_9941/1-155        GA-TGGGCCCAACAGAAGTGGGTTTGCAATGCCCAGGTTCAAGGAATT---CACAAGTGG
83240_ENSDARG00000004048_ZEBRAFISH_8782_8931/1-155 GACAGGGCTTAAGATGGGCAGATTCCCAA---AATGTCTCACGGAATTTGGAACAGGGTG
83240_ENSMUSG00000030016_MOUSE_9792_9941/1-155     GA-CGGGCCCAACAGAAGTGGGCTCGCAATGCCCAGGCTCAAGGAATT---CACAAGTGG
83240_ENSRNOG00000014501_RAT_9792_9941/1-155       GA-TGGGCCCAACAGAAGTGGGTTTGCAATGCCCAGGCTCAAGGAATT---CACAAGTGG
                                                   **  ****  ** *   *  *  *  ***      *  *** ******    *** *  *


83240_ENSG00000075292_HUMAN_9792_9941/1-155        TGCGAAATTTTCCAAGAATAACACAAAGCTGAAA-
83240_ENSDARG00000004048_ZEBRAFISH_8782_8931/1-155 CACGCAACTTTCCAAGAACAACGAAAAGCTGGAAA
83240_ENSMUSG00000030016_MOUSE_9792_9941/1-155     TGCGAAATTTTCCAAGAATAACACAAAGCTGAAA-
83240_ENSRNOG00000014501_RAT_9792_9941/1-155       TGCGAAATTTTCCAAGAATAACACAAAGCTGAAA-
                                                     ** ** ********** ***  ******* ** 

83240-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 155
 Mean pairwise identity:  82.30
 Mean single sequence MFE: -44.13
 Consensus MFE: -28.98
 Energy contribution: -28.10
 Covariance contribution:  -0.87
 Mean z-score:  -1.67
 Structure conservation index:   0.66
 SVM decision value:   0.10
 SVM RNA-class probability: 0.582765
 Prediction: RNA

######################################################################

>83240_ENSG00000075292_HUMAN_9792_9941/1-155
GCAACGGCAUUCAGCUGCUGAAGCGCCAACUGAGUCUUAAUCUGAGCAAAGUGCAAAGGAGAUGGGCCCAACAGAAGUGGGUUUGCAAUGCCCAGGUUCAAGGAAUUCACAAGUGGUGCGAAAUUUUCCAAGAAUAACACAAAGCUGAAA
((....)).(((((((..((..((((((..((((((((((((((.(((...(((((.........(((((.......)))))))))).))).))))))..))).)))))....))))))...((((.....))))....)).))))))). ( -44.10)
>83240_ENSDARG00000004048_ZEBRAFISH_8782_8931/1-155
CAAUUGCAUUCAGCUGGUGCAGUGCCAACUGAGUCUUUAUCUGUGCCAACUGCAGGGAGACAGGGCUUAAGAUGGGCAGAUUCCCAAAAUGUCUCACGGAAUUUGGAACAGGGUGCACGCAACUUUCCAAGAACAACGAAAAGCUGGAAA
........(((((((.(((((.(.(((.(((((((((..(((.(((.....))).)))...))))))).)).))).((((((((.............))))))))......).))))).....((((..........))))))))))).. ( -41.42)
>83240_ENSMUSG00000030016_MOUSE_9792_9941/1-155
GCAACGGCAUUCAGCUGCUGAAGCGCCAACUGAGUCUCAAUCUGAGCAAAGCGCAAAGGAGACGGGCCCAACAGAAGUGGGCUCGCAAUGCCCAGGCUCAAGGAAUUCACAAGUGGUGCGAAAUUUUCCAAGAAUAACACAAAGCUGAAA
((....)).(((((((..((..((((((..(((((..(....(((((...(.(((..(....)(((((((.......)))))))....))))...))))).)..)))))....))))))...((((.....))))....)).))))))). ( -49.10)
>83240_ENSRNOG00000014501_RAT_9792_9941/1-155
GCAACGGCAUUCAGCUGCUGAAGCGCCAACUGAGUCUUAAUCUGAGCAAAGUGCAAAGGAGAUGGGCCCAACAGAAGUGGGUUUGCAAUGCCCAGGCUCAAGGAAUUCACAAGUGGUGCGAAAUUUUCCAAGAAUAACACAAAGCUGAAA
((....)).(((((((..((..((((((..((((((((..(((..((.....))..)))...((((((.........(((((.......)))))))))))))).)))))....))))))...((((.....))))....)).))))))). ( -41.90)
>consensus
GCAACGGCAUUCAGCUGCUGAAGCGCCAACUGAGUCUUAAUCUGAGCAAAGUGCAAAGGAGA_UGGGCCCAACAGAAGUGGGUUCGCAAUGCCCAGGCUCAAGGAAUU___CACAAGUGGUGCGAAAUUUUCCAAGAAUAACACAAAGCUGAAA_
.........(((((((..((..((((((..((((((....(((..((.....))...)))....(((((((.......)))))))..........)))))).(..........)...))))))......(((...)))...))...))))))).. (-28.98 = -28.10 +  -0.87) 

83240-rev.rnaz

RNAalifold consensus structure

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