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Results for CNB 153187

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

153187_ENSG00000144355_HUMAN_4449_4498/1-50        TTTGAACCGAGTTTGGGGAGCTCAGCAGCATCATGCTTAGACTTTTCAAA
153187_ENSDARG00000018924_ZEBRAFISH_9512_9559/1-50 -TTGAGACAAATTTGGTGGTTTCAGCGGAAATGTGTTTGAGCCTCCCAA-
153187_ENSMUSG00000041911_MOUSE_4610_4658/1-50     -TTGAACCGAGTTTGGGGAGCTCGGCAGCATCATGCTTAGACTTTTCAAA
153187_ENSRNOG00000001520_RAT_4803_4851/1-50       -TTGAACCGAGTTTGGGGAGCTCGGCAGCATCATGCTTAGACTTTTCAAA
                                                    ****  * * ***** *   ** ** * *   ** **   * *  *** 


//

153187.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 50
 Mean pairwise identity:  76.43
 Mean single sequence MFE: -12.80
 Consensus MFE: -11.60
 Energy contribution: -10.35
 Covariance contribution:  -1.25
 Mean z-score:  -1.19
 Structure conservation index:   0.91
 SVM decision value:   0.97
 SVM RNA-class probability: 0.893090
 Prediction: RNA

######################################################################

>153187_ENSG00000144355_HUMAN_4449_4498/1-50
UUUGAACCGAGUUUGGGGAGCUCAGCAGCAUCAUGCUUAGACUUUUCAAA
...........((((..(((((.((((......)))).)).)))..)))) ( -13.80)
>153187_ENSDARG00000018924_ZEBRAFISH_9512_9559/1-50
UUGAGACAAAUUUGGUGGUUUCAGCGGAAAUGUGUUUGAGCCUCCCAA
.............((.(((((.((((......)))).))))).))... (  -9.80)
>153187_ENSMUSG00000041911_MOUSE_4610_4658/1-50
UUGAACCGAGUUUGGGGAGCUCGGCAGCAUCAUGCUUAGACUUUUCAAA
..........((((..(((((.((((......)))).)).)))..)))) ( -13.80)
>153187_ENSRNOG00000001520_RAT_4803_4851/1-50
UUGAACCGAGUUUGGGGAGCUCGGCAGCAUCAUGCUUAGACUUUUCAAA
..........((((..(((((.((((......)))).)).)))..)))) ( -13.80)
>consensus
_UUGAACCGAGUUUGGGGAGCUCAGCAGCAUCAUGCUUAGACUUUUCAAA
............((((((((((.((((......)))).)).)))))))). (-11.60 = -10.35 +  -1.25) 

153187.rnaz

RNAalifold consensus structure

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