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Results for CNB 502368-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


502368_ENSG00000159592_HUMAN_9630_9688/1-59    TTTAGGTCCAGTGTCTCCTTTCAGTAAGGTGAGGCATCCAACCTCATGGCCAGGATCTG
502368_ENSRNOG00000016336_RAT_9791_9846/1-59   TTTAGGTCCAGTGTCT--TTTCAGCAAGTTGAGGCATCCAACCTCATGGCCAGGATCT-
502368_ENSMUSG00000034042_MOUSE_9884_9939/1-59 TTTAGGTCCAGTGTCT--TTTTAGCAAGATGAGGCATCCAACCTCATGGCCAGGATCT-
502368_SINFRUG00000128130_FUGU_3910_3968/1-59  TTTAGGTCCAGTGTTTCCGGTCAGTGGATCGAGGCATCAAACCTCATGGCCAGGATCTG
                                               ************** *    * **      ******** ******************* 

502368-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 59
 Mean pairwise identity:  86.32
 Mean single sequence MFE: -16.62
 Consensus MFE: -12.91
 Energy contribution: -13.22
 Covariance contribution:   0.31
 Mean z-score:  -1.49
 Structure conservation index:   0.78
 SVM decision value:   0.12
 SVM RNA-class probability: 0.590887
 Prediction: RNA

######################################################################

>502368_ENSG00000159592_HUMAN_9630_9688/1-59
UUUAGGUCCAGUGUCUCCUUUCAGUAAGGUGAGGCAUCCAACCUCAUGGCCAGGAUCUG
..(((((((.(((((((((((....)))).)))))))(((......)))...))))))) ( -18.90)
>502368_ENSRNOG00000016336_RAT_9791_9846/1-59
UUUAGGUCCAGUGUCUUUUCAGCAAGUUGAGGCAUCCAACCUCAUGGCCAGGAUCU
...((((((.(((((((..(.....)..)))))))(((......)))...)))))) ( -14.90)
>502368_ENSMUSG00000034042_MOUSE_9884_9939/1-59
UUUAGGUCCAGUGUCUUUUUAGCAAGAUGAGGCAUCCAACCUCAUGGCCAGGAUCU
...((((((...(((((......)))))((((.......)))).......)))))) ( -14.30)
>502368_SINFRUG00000128130_FUGU_3910_3968/1-59
UUUAGGUCCAGUGUUUCCGGUCAGUGGAUCGAGGCAUCAAACCUCAUGGCCAGGAUCUG
..(((((((.(((((((.((((....)))))))))))....((....))...))))))) ( -18.40)
>consensus
UUUAGGUCCAGUGUCU__UUUCAGCAAGUUGAGGCAUCCAACCUCAUGGCCAGGAUCU_
...((((((.(((((((.(((.....))).)))))))....((....))...)))))). (-12.91 = -13.22 +   0.31) 

502368-rev.rnaz

RNAalifold consensus structure

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