Index >

Results for CNB 363128

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

363128_ENSG00000104313_HUMAN_8177_8286/1-119        C-----CCCTGACAAGGGGAGG--AGGAGGATAGACCTGCA-GGAGGAAACAACAGTTGA
363128_ENSDARG00000014259_ZEBRAFISH_7954_8067/1-119 -CCTTTCCGTCATTGGGCCGGG--AGGAGGGAAGACCTGGAAGGAGGAAACAACGGTGGA
363128_ENSRNOG00000007590_RAT_8240_8351/1-119       C-----TCTTGACAAGGGGAGGGGAGGAGGAGAGACCTGCA-GGAAGAAACAGCAGTTGA
363128_ENSMUSG00000025932_MOUSE_8200_8311/1-119     C-----TCCTGACAAGGGGAGGGGAGGAGGATAGACCTGCA-GGAAGAAACAACAGTTGA
                                                           * * *   **   **  ******  ******* * *** ****** * ** **


363128_ENSG00000104313_HUMAN_8177_8286/1-119        GACCTC-AACTTAAAGACAATATGCCTTTCACTGCTGCAGTATCCTCCTTTTTCTCTTT
363128_ENSDARG00000014259_ZEBRAFISH_7954_8067/1-119 GGGGTTGAACCTACAGACAATGTGCCTCTCTGTTCCACCGACTCCTC-TCTTCCCCTT-
363128_ENSRNOG00000007590_RAT_8240_8351/1-119       GCCCTC-CACTTAAAGATACTATGCCTTTCCTGGCCGCAGTATCCTCCCTTTTCTCTTT
363128_ENSMUSG00000025932_MOUSE_8200_8311/1-119     GCCCTC-CACTTAAAGACACTATGCCTTTCCTGGCTGCAGTATCCTCCCTTTTCTCGTT
                                                    *   *   ** ** *** * * ***** **    *  * *  *****   ** * * * 


//

363128.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 119
 Mean pairwise identity:  74.24
 Mean single sequence MFE: -40.62
 Consensus MFE: -19.66
 Energy contribution: -20.23
 Covariance contribution:   0.56
 Mean z-score:  -2.50
 Structure conservation index:   0.48
 SVM decision value:   1.35
 SVM RNA-class probability: 0.947210
 Prediction: RNA

######################################################################

>363128_ENSG00000104313_HUMAN_8177_8286/1-119
CCCCUGACAAGGGGAGGAGGAGGAUAGACCUGCAGGAGGAAACAACAGUUGAGACCUCAACUUAAAGACAAUAUGCCUUUCACUGCUGCAGUAUCCUCCUUUUUCUCUUU
........((((((((((((((((((...((((((.((........((((((....)))))).((((.(.....).))))..)).)))))))))))))))))))))))). ( -42.80)
>363128_ENSDARG00000014259_ZEBRAFISH_7954_8067/1-119
CCUUUCCGUCAUUGGGCCGGGAGGAGGGAAGACCUGGAAGGAGGAAACAACGGUGGAGGGGUUGAACCUACAGACAAUGUGCCUCUCUGUUCCACCGACUCCUCUCUUCCCCUU
(((..(.(((....))).)..))).(((((((...(((....(....)..((((((((.((..((...((((.....))))..)).)).))))))))..)))..)))))))... ( -44.40)
>363128_ENSRNOG00000007590_RAT_8240_8351/1-119
CUCUUGACAAGGGGAGGGGAGGAGGAGAGACCUGCAGGAAGAAACAGCAGUUGAGCCCUCCACUUAAAGAUACUAUGCCUUUCCUGGCCGCAGUAUCCUCCCUUUUCUCUUU
........((((..(((((((((((.(.(((.(((.(.......).))))))...)))))).......((((((..(((......)))...)))))).))))))..).))). ( -37.80)
>363128_ENSMUSG00000025932_MOUSE_8200_8311/1-119
CUCCUGACAAGGGGAGGGGAGGAGGAUAGACCUGCAGGAAGAAACAACAGUUGAGCCCUCCACUUAAAGACACUAUGCCUUUCCUGGCUGCAGUAUCCUCCCUUUUCUCGUU
.((((....))))(((..((((((((((...((((((((.(.(((....)))...)..)))...............(((......)))))))))))))).))))..)))... ( -37.50)
>consensus
C_____CCCUGACAAGGGGAGG__AGGAGGAUAGACCUGCA_GGAAGAAACAACAGUUGAGCCCUC_AACUUAAAGACAAUAUGCCUUUCCUGGCCGCAGUAUCCUCCCUUUUCUCUUU
...............((..(((((((((((.....)).(((.(((((.........(((((........)))))............))))).))).......)))))))))..)).... (-19.66 = -20.23 +   0.56) 

363128.rnaz

RNAalifold consensus structure

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