Index >

Results for CNB 57633

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

57633_ENSG00000187049_HUMAN_9283_9374/1-92  CTCCACCCCGCTGGAAATCCTGTTCTTTCTGAACGGGTGGTATAATGCTACCTATTTCCT
57633_ENSMUSG00000024667_MOUSE_548_639/1-92 CTCAACCCCCCTGGAAGTCCTGTTCTTTCTGAATGGGTGGTACTATGCTACCTATTTCCT
57633_ENSRNOG00000020692_RAT_9464_9555/1-92 CTCAACCCCTCTGGAAATCCTGTTCTTTCTGAATGGGTGGTACTATGCTACCTATTTCCT
57633_SINFRUG00000151838_FUGU_606_695/1-92  -TCGACTCCTCTGCAGGTTCTCCTCTACCTCAACCAATGGTTCTTTGCTGCCTTCTACCT
                                             ** ** ** *** *  * **  ***  ** **    ****    **** ***  * ***


57633_ENSG00000187049_HUMAN_9283_9374/1-92  GCTGGAACTTTTCATATTTCTGTATAAAGGTA
57633_ENSMUSG00000024667_MOUSE_548_639/1-92 GCTGGAGCTCCTTATTTTCCTGTACAAAGGTA
57633_ENSRNOG00000020692_RAT_9464_9555/1-92 GCTGGAGCTCCTTATTTTCCTGTACAAAGGTA
57633_SINFRUG00000151838_FUGU_606_695/1-92  GGTGGAGGTTCTGATCTTCATCTACAAAGGT-
                                            * ****  *  * ** **  * ** ****** 


//

57633.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 92
 Mean pairwise identity:  77.90
 Mean single sequence MFE: -23.34
 Consensus MFE: -15.51
 Energy contribution: -16.32
 Covariance contribution:   0.81
 Mean z-score:  -2.25
 Structure conservation index:   0.66
 SVM decision value:   1.76
 SVM RNA-class probability: 0.975925
 Prediction: RNA

######################################################################

>57633_ENSG00000187049_HUMAN_9283_9374/1-92
CUCCACCCCGCUGGAAAUCCUGUUCUUUCUGAACGGGUGGUAUAAUGCUACCUAUUUCCUGCUGGAACUUUUCAUAUUUCUGUAUAAAGGUA
......((.((.(((((((((((((.....))))))).((((......)))).)))))).)).)).((((((.((((....)))))))))). ( -27.10)
>57633_ENSMUSG00000024667_MOUSE_548_639/1-92
CUCAACCCCCCUGGAAGUCCUGUUCUUUCUGAAUGGGUGGUACUAUGCUACCUAUUUCCUGCUGGAGCUCCUUAUUUUCCUGUACAAAGGUA
....(((.....(((((....(((((..(.(((((((((((.....)))))))))))...)..))))).......)))))........))). ( -22.42)
>57633_ENSRNOG00000020692_RAT_9464_9555/1-92
CUCAACCCCUCUGGAAAUCCUGUUCUUUCUGAAUGGGUGGUACUAUGCUACCUAUUUCCUGCUGGAGCUCCUUAUUUUCCUGUACAAAGGUA
....(((.....(((((....(((((..(.(((((((((((.....)))))))))))...)..))))).......)))))........))). ( -22.72)
>57633_SINFRUG00000151838_FUGU_606_695/1-92
UCGACUCCUCUGCAGGUUCUCCUCUACCUCAACCAAUGGUUCUUUGCUGCCUUCUACCUGGUGGAGGUUCUGAUCUUCAUCUACAAAGGU
......(((.((.((((((.((((((((.........(((........)))........))))))))....)).....)))).)).))). ( -21.13)
>consensus
CUCAACCCCUCUGGAAAUCCUGUUCUUUCUGAACGGGUGGUACUAUGCUACCUAUUUCCUGCUGGAGCUCCUUAUUUUCCUGUACAAAGGUA
....(((.....(((((....(((((..(.(((((((((((.....)))))))))))...)..))))).......)))))........))). (-15.51 = -16.32 +   0.81) 

57633.rnaz

RNAalifold consensus structure

PS | PDF	PS | PDF